Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10a21r
         (533 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57823| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.59 
SB_37499| Best HMM Match : 7tm_1 (HMM E-Value=4e-09)                   30   1.0  
SB_5806| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.4  
SB_33941| Best HMM Match : 7tm_1 (HMM E-Value=0)                       27   9.6  

>SB_57823| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 614

 Score = 31.1 bits (67), Expect = 0.59
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -1

Query: 491 NLSCPRRTLP-TSERGSGGDAADSAPRVTRAPTITAS 384
           N  CP RT+P T +  +  D   +AP + + PT  AS
Sbjct: 385 NYDCPPRTVPSTGDAPANNDPVSNAPMMNKGPTSDAS 421


>SB_37499| Best HMM Match : 7tm_1 (HMM E-Value=4e-09)
          Length = 378

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -1

Query: 443 GGDAADSAPRVTRAPTITASRVRDHVSSLLVIFYVS 336
           GGD AD APR  R       +    + +L+V FYVS
Sbjct: 267 GGDGADRAPRGVRPGPRRDGKFTSAILTLIVCFYVS 302


>SB_5806| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 418

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = -1

Query: 410 TRAPTITASRVRDHVSSLLVIFYVSVRSVQVMRTTNNTSMILRSFKSYN 264
           T  P   A     HV         + R + ++R T NT++I R FK++N
Sbjct: 113 TNHPDRIACSGVSHVGISYHSLVYAYRKLSIVRLTKNTTIIYRKFKNFN 161


>SB_33941| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 302

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 10/30 (33%), Positives = 21/30 (70%)
 Frame = -1

Query: 368 VSSLLVIFYVSVRSVQVMRTTNNTSMILRS 279
           +S+  ++F V++R  + + TTNN+S I ++
Sbjct: 147 ISAYSIVFRVALRQTRRINTTNNSSQIRKT 176


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,538,869
Number of Sequences: 59808
Number of extensions: 199343
Number of successful extensions: 485
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 485
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1203486867
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)