Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10a21f
         (575 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q0U2N0 Cluster: Predicted protein; n=1; Phaeosphaeria n...    34   2.1  
UniRef50_Q5HDU3 Cluster: Drug transporter, putative; n=17; Staph...    34   2.8  
UniRef50_UPI0000E478F5 Cluster: PREDICTED: similar to plus agglu...    32   8.4  

>UniRef50_Q0U2N0 Cluster: Predicted protein; n=1; Phaeosphaeria
           nodorum|Rep: Predicted protein - Phaeosphaeria nodorum
           (Septoria nodorum)
          Length = 607

 Score = 34.3 bits (75), Expect = 2.1
 Identities = 16/33 (48%), Positives = 20/33 (60%)
 Frame = +1

Query: 76  SERGSGGDAADSAPRVTRAPTITASRVRDHVSS 174
           S+RG G DA D+ PR  +AP IT  R R   S+
Sbjct: 353 SKRGKGKDATDANPRPIKAPRITGRRTRARSSA 385


>UniRef50_Q5HDU3 Cluster: Drug transporter, putative; n=17;
           Staphylococcus|Rep: Drug transporter, putative -
           Staphylococcus aureus (strain COL)
          Length = 403

 Score = 33.9 bits (74), Expect = 2.8
 Identities = 14/28 (50%), Positives = 20/28 (71%)
 Frame = +1

Query: 463 NRSSIIFQSIKLIHLINFIQYLCVYLIL 546
           N+S I  +S  +  L+NFI YLC+YL+L
Sbjct: 8   NKSPIFTKSFTINFLVNFIVYLCMYLLL 35


>UniRef50_UPI0000E478F5 Cluster: PREDICTED: similar to plus
           agglutinin; n=1; Strongylocentrotus purpuratus|Rep:
           PREDICTED: similar to plus agglutinin -
           Strongylocentrotus purpuratus
          Length = 2710

 Score = 32.3 bits (70), Expect = 8.4
 Identities = 21/62 (33%), Positives = 33/62 (53%)
 Frame = +1

Query: 61  RTLPTSERGSGGDAADSAPRVTRAPTITASRVRDHVSSLLVIFYVSVRSVQVMRTTNNTS 240
           + LP+  +   G+   S P + + P +T    +D VSS  V    SV+S  V+ TT+NTS
Sbjct: 814 KRLPSQTQTLPGNNG-SVPALVQHPQLTQQNFQDSVSSAAV----SVQSTSVLSTTSNTS 868

Query: 241 MI 246
            +
Sbjct: 869 SL 870


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 436,522,808
Number of Sequences: 1657284
Number of extensions: 7159652
Number of successful extensions: 22606
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 21552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22574
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 39571085965
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)