Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10a20r
         (770 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15E1.10 ||SPAP7G5.01|PI31 proteasome regulator related|Schiz...    31   0.24 
SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|c...    27   2.2  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    26   6.9  
SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb...    25   9.1  
SPBC15D4.01c ||SPBC2D10.21c|kinesin-like protein|Schizosaccharom...    25   9.1  

>SPAC15E1.10 ||SPAP7G5.01|PI31 proteasome regulator
           related|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 265

 Score = 30.7 bits (66), Expect = 0.24
 Identities = 26/77 (33%), Positives = 32/77 (41%), Gaps = 6/77 (7%)
 Frame = -1

Query: 359 GVNPDSQDLWAVPPGRNVGHSDLDPFSPFG------GGMIFNPFAPRRDIENPGLGVPGG 198
           G  P SQ ++      ++G SDL P    G      GGMI     P    EN        
Sbjct: 151 GAMPGSQPMFP-----SIGASDLYPAGIGGSDMGNDGGMIPTFNHPIFHPENRSRNEQAS 205

Query: 197 LPRAAVPPGARFDPFAP 147
             R  +PPGAR+DP  P
Sbjct: 206 ANRTNIPPGARYDPTGP 222


>SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 474

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = +1

Query: 160 SKRAPGGTAALGNPPGTPRPGFSMSRRGANGLNIIPPPKGENGSRSEWPTLRP 318
           S+R+P  ++   N   T   GF   R+GA+  ++IPP +  +      P L P
Sbjct: 12  SRRSPSSSSIGTNE--TDHTGFHEKRQGASSESLIPPAQRSSEESMPAPKLFP 62


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 3227

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 507 FVIRHHDVYGSI*FFQYFVYLYTYVRN 587
           F++ HH+VYGS  F      + T++ N
Sbjct: 533 FLLEHHEVYGSNLFASTTNIMSTFIHN 559


>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1073

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 9/28 (32%), Positives = 19/28 (67%)
 Frame = -1

Query: 554 LKESNGTIDVMMPNYKDFIFVIKRDLID 471
           L E +G  + ++  Y + IF++K+DL++
Sbjct: 502 LLEVSGDEEFVLAAYNELIFIVKKDLMN 529


>SPBC15D4.01c ||SPBC2D10.21c|kinesin-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 633

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +1

Query: 196 NPPGTPRPGFSMSRRGANGLNIIPPPKGEN-GSRS 297
           +P G+      + R  AN   I+PPP  EN GS+S
Sbjct: 371 DPFGSFDENAQVMRYSANAREILPPPLNENSGSQS 405


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,123,344
Number of Sequences: 5004
Number of extensions: 66500
Number of successful extensions: 195
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)