Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10a20r
(770 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132858-2|CAB60476.2| 821|Caenorhabditis elegans Hypothetical ... 36 0.042
AL117203-6|CAB60419.1| 234|Caenorhabditis elegans Hypothetical ... 35 0.074
U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequen... 34 0.13
Z70038-1|CAA93884.1| 2219|Caenorhabditis elegans Hypothetical pr... 32 0.39
Z49907-2|CAA90084.1| 324|Caenorhabditis elegans Hypothetical pr... 31 0.69
U55366-4|AAA97982.1| 310|Caenorhabditis elegans Collagen protei... 31 0.69
Z54237-5|CAN86900.1| 273|Caenorhabditis elegans Hypothetical pr... 31 0.91
Z54237-4|CAN86899.1| 297|Caenorhabditis elegans Hypothetical pr... 31 0.91
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 31 0.91
Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 31 0.91
Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 31 0.91
U80451-8|AAB37842.2| 288|Caenorhabditis elegans Collagen protei... 31 0.91
U40060-2|AAP82656.1| 108|Caenorhabditis elegans Collagen protei... 31 0.91
U40060-1|AAA81141.1| 341|Caenorhabditis elegans Collagen protei... 31 0.91
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 31 0.91
AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical ... 30 1.6
AL032627-21|CAD66221.1| 289|Caenorhabditis elegans Hypothetical... 30 1.6
AF099925-3|AAC69507.1| 394|Caenorhabditis elegans Collagen prot... 30 1.6
L15419-1|AAA17726.1| 308|Caenorhabditis elegans col-40 collagen... 30 2.1
AL132952-24|CAB61143.2| 351|Caenorhabditis elegans Hypothetical... 30 2.1
AF026211-4|AAB71295.1| 416|Caenorhabditis elegans Collagen prot... 30 2.1
Z81479-3|CAB03942.1| 283|Caenorhabditis elegans Hypothetical pr... 29 2.8
Z81479-2|CAB03941.1| 283|Caenorhabditis elegans Hypothetical pr... 29 2.8
Z69787-1|CAA93642.1| 300|Caenorhabditis elegans Hypothetical pr... 29 2.8
U23520-6|AAC46553.1| 287|Caenorhabditis elegans Collagen protei... 29 2.8
Z46791-2|CAA86756.1| 283|Caenorhabditis elegans Hypothetical pr... 29 3.7
Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical pr... 29 3.7
X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) coll... 29 3.7
U80451-9|AAB37843.1| 285|Caenorhabditis elegans Collagen protei... 29 3.7
U52002-6|AAB37732.1| 142|Caenorhabditis elegans Hypothetical pr... 29 3.7
L11247-3|AAA28008.1| 278|Caenorhabditis elegans Collagen protei... 29 3.7
AF047652-5|AAC04391.2| 449|Caenorhabditis elegans Hypothetical ... 29 3.7
Z35719-1|CAA84800.1| 296|Caenorhabditis elegans Hypothetical pr... 29 4.8
AF308860-1|AAG45416.1| 1475|Caenorhabditis elegans SOP-3 protein. 29 4.8
AC024201-13|AAF36027.2| 1475|Caenorhabditis elegans Suppressor o... 29 4.8
Z99942-1|CAB17068.2| 454|Caenorhabditis elegans Hypothetical pr... 28 6.4
Z81138-4|CAB03474.1| 304|Caenorhabditis elegans Hypothetical pr... 28 6.4
Z81138-3|CAB63321.1| 304|Caenorhabditis elegans Hypothetical pr... 28 6.4
Z81138-1|CAB03475.1| 304|Caenorhabditis elegans Hypothetical pr... 28 6.4
Z67990-1|CAA91932.1| 316|Caenorhabditis elegans Hypothetical pr... 28 6.4
U58736-1|AAB00598.1| 302|Caenorhabditis elegans Dumpy : shorter... 28 6.4
U23172-13|ABH03527.1| 282|Caenorhabditis elegans Hypothetical p... 28 6.4
U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical p... 28 6.4
AC024811-5|AAF60775.1| 285|Caenorhabditis elegans Collagen prot... 28 6.4
Z82268-5|CAB05195.1| 304|Caenorhabditis elegans Hypothetical pr... 28 8.5
Z81567-3|CAB04587.1| 301|Caenorhabditis elegans Hypothetical pr... 28 8.5
Z73969-6|CAA98236.1| 295|Caenorhabditis elegans Hypothetical pr... 28 8.5
Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical pr... 28 8.5
Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen... 28 8.5
Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen... 28 8.5
X64435-1|CAA45773.1| 318|Caenorhabditis elegans collagen protein. 28 8.5
V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein ( Caeno... 28 8.5
U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein ... 28 8.5
U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein ... 28 8.5
U41624-3|AAF99944.1| 318|Caenorhabditis elegans Dumpy : shorter... 28 8.5
U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV) coll... 28 8.5
J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein ( C.ele... 28 8.5
AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen stru... 28 8.5
AL034543-4|CAA22518.1| 323|Caenorhabditis elegans Hypothetical ... 28 8.5
AF067607-9|AAF98609.1| 460|Caenorhabditis elegans Collagen prot... 28 8.5
AF045645-6|AAC02608.1| 314|Caenorhabditis elegans Collagen prot... 28 8.5
>AL132858-2|CAB60476.2| 821|Caenorhabditis elegans Hypothetical
protein Y113G7A.3 protein.
Length = 821
Score = 35.5 bits (78), Expect = 0.042
Identities = 18/35 (51%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = -1
Query: 221 PGLGVPGGLPRAAVP--PGARFDPFAPPGVGEPIP 123
PG G+PGGLPR P PGA PG G P+P
Sbjct: 246 PGSGLPGGLPRGGGPPLPGAA-QGIVAPGGGAPVP 279
>AL117203-6|CAB60419.1| 234|Caenorhabditis elegans Hypothetical
protein Y48C3A.9 protein.
Length = 234
Score = 34.7 bits (76), Expect = 0.074
Identities = 32/84 (38%), Positives = 35/84 (41%), Gaps = 15/84 (17%)
Frame = -1
Query: 326 VPPGRNVGHSDLDPFSP--FGG--GMIFNPFAPRRDIENPGLGVPGGLPRAA---VPPGA 168
+PPG N GH P GG G FAP R PG PGG+P A PP
Sbjct: 109 MPPGMN-GHFAPPPMGMEMMGGHPGAFGGRFAPGR--MPPGAMAPGGMPPGAFPMFPPDP 165
Query: 167 RFDPFA--------PPGVGEPIPG 120
R A PP VG+P PG
Sbjct: 166 RLQRMAPNQGMRMPPPPVGQPFPG 189
>U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequence
x-hybridizingprotein 1 protein.
Length = 589
Score = 33.9 bits (74), Expect = 0.13
Identities = 28/71 (39%), Positives = 29/71 (40%), Gaps = 2/71 (2%)
Frame = -1
Query: 329 AVPPGRNVGHSDLDPFSPFGGGM-IFNPFAPRRDIENPGLGVPGGLPRAAVPPGARFDPF 153
A P G G D P GG FNP PG P G P + PPG FDP
Sbjct: 235 APPSGGPPGPFDPSGAPPSGGPPGPFNPSGAPPSGGPPGPFDPSGAPPSGGPPGP-FDPS 293
Query: 152 -APPGVGEPIP 123
APP G P P
Sbjct: 294 GAPPSGGPPGP 304
Score = 33.9 bits (74), Expect = 0.13
Identities = 28/71 (39%), Positives = 29/71 (40%), Gaps = 2/71 (2%)
Frame = -1
Query: 329 AVPPGRNVGHSDLDPFSPFGGGM-IFNPFAPRRDIENPGLGVPGGLPRAAVPPGARFDPF 153
A P G G D P GG FNP PG P G P + PPG FDP
Sbjct: 325 APPSGGPPGPFDPSGAPPSGGPPGPFNPSGAPPSGGPPGPFDPSGAPPSGGPPGP-FDPS 383
Query: 152 -APPGVGEPIP 123
APP G P P
Sbjct: 384 GAPPSGGPPGP 394
Score = 32.7 bits (71), Expect = 0.30
Identities = 27/71 (38%), Positives = 29/71 (40%), Gaps = 2/71 (2%)
Frame = -1
Query: 329 AVPPGRNVGHSDLDPFSPFGGGM-IFNPFAPRRDIENPGLGVPGGLPRAAVPPGARFDPF 153
A P G G D P GG FNP PG P G P + PPG F+P
Sbjct: 205 APPSGGPTGPFDPSGAPPSGGPPGPFNPSGAPPSGGPPGPFDPSGAPPSGGPPGP-FNPS 263
Query: 152 -APPGVGEPIP 123
APP G P P
Sbjct: 264 GAPPSGGPPGP 274
Score = 32.3 bits (70), Expect = 0.39
Identities = 27/71 (38%), Positives = 29/71 (40%), Gaps = 2/71 (2%)
Frame = -1
Query: 329 AVPPGRNVGHSDLDPFSPFGGGM-IFNPFAPRRDIENPGLGVPGGLPRAAVPPGARFDPF 153
A P G G D P GG FNP PG P G P + PPG F+P
Sbjct: 295 APPSGGPPGPFDPSGAQPSGGPPGPFNPSGAPPSGGPPGPFDPSGAPPSGGPPGP-FNPS 353
Query: 152 -APPGVGEPIP 123
APP G P P
Sbjct: 354 GAPPSGGPPGP 364
Score = 31.9 bits (69), Expect = 0.52
Identities = 27/71 (38%), Positives = 29/71 (40%), Gaps = 2/71 (2%)
Frame = -1
Query: 329 AVPPGRNVGHSDLDPFSPFGGGM-IFNPFAPRRDIENPGLGVPGGLPRAAVPPGARFDPF 153
A P G G D P GG FNP PG P G P + PPG F+P
Sbjct: 385 APPSGGPPGPFDPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPSGGPPGP-FNPS 443
Query: 152 -APPGVGEPIP 123
APP G P P
Sbjct: 444 GAPPSGGPPGP 454
Score = 31.9 bits (69), Expect = 0.52
Identities = 26/62 (41%), Positives = 28/62 (45%), Gaps = 7/62 (11%)
Frame = -1
Query: 287 PFSPFG----GGMI--FNPFAPRRDIENPGLGVPGGLPRAAVPPGARFDPF-APPGVGEP 129
PF+P G GG FNP PG P G P + PPG FDP APP G P
Sbjct: 439 PFNPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPSGGPPGP-FDPSGAPPSGGPP 497
Query: 128 IP 123
P
Sbjct: 498 GP 499
Score = 29.9 bits (64), Expect = 2.1
Identities = 15/33 (45%), Positives = 16/33 (48%)
Frame = -1
Query: 221 PGLGVPGGLPRAAVPPGARFDPFAPPGVGEPIP 123
PGL P G P + PPG APP G P P
Sbjct: 167 PGLFDPSGAPPSGGPPGPFGPSGAPPSGGPPGP 199
Score = 29.9 bits (64), Expect = 2.1
Identities = 25/62 (40%), Positives = 28/62 (45%), Gaps = 7/62 (11%)
Frame = -1
Query: 287 PFSPFGG---GMIFNPFAPRRDIEN---PGLGVPGGLPRAAVPPGARFDPF-APPGVGEP 129
PF+P G G PF P + PG P G P + PPG FDP APP G P
Sbjct: 349 PFNPSGAPPSGGPPGPFDPSGAPPSGGPPGPFDPSGAPPSGGPPGP-FDPSGAPPSGGPP 407
Query: 128 IP 123
P
Sbjct: 408 GP 409
Score = 29.9 bits (64), Expect = 2.1
Identities = 25/62 (40%), Positives = 28/62 (45%), Gaps = 7/62 (11%)
Frame = -1
Query: 287 PFSPFG----GGMI--FNPFAPRRDIENPGLGVPGGLPRAAVPPGARFDPF-APPGVGEP 129
PF+P G GG FNP PG P G P + PPG F+P APP G P
Sbjct: 409 PFNPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPSGGPPGP-FNPSGAPPSGGPP 467
Query: 128 IP 123
P
Sbjct: 468 GP 469
Score = 29.9 bits (64), Expect = 2.1
Identities = 25/62 (40%), Positives = 28/62 (45%), Gaps = 7/62 (11%)
Frame = -1
Query: 287 PFSPFG----GGMI--FNPFAPRRDIENPGLGVPGGLPRAAVPPGARFDPF-APPGVGEP 129
PF+P G GG FNP PG P G P + PPG F+P APP G P
Sbjct: 424 PFNPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPSGGPPGP-FNPSGAPPSGGPP 482
Query: 128 IP 123
P
Sbjct: 483 GP 484
Score = 29.9 bits (64), Expect = 2.1
Identities = 25/62 (40%), Positives = 28/62 (45%), Gaps = 7/62 (11%)
Frame = -1
Query: 287 PFSPFG----GGMI--FNPFAPRRDIENPGLGVPGGLPRAAVPPGARFDPF-APPGVGEP 129
PF+P G GG FNP PG P G P + PPG F+P APP G P
Sbjct: 454 PFNPSGAPPSGGPPGPFNPSGAPPSGGPPGPFDPSGAPPSGGPPGP-FNPSGAPPSGGPP 512
Query: 128 IP 123
P
Sbjct: 513 GP 514
Score = 29.5 bits (63), Expect = 2.8
Identities = 17/34 (50%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = -1
Query: 221 PGLGVPGGLPRAAVPPGARFDPF-APPGVGEPIP 123
PG P G P + PPG FDP APP G P P
Sbjct: 152 PGPFDPSGAPPSGGPPGL-FDPSGAPPSGGPPGP 184
Score = 29.1 bits (62), Expect = 3.7
Identities = 27/67 (40%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Frame = -1
Query: 308 VGHSDL-DPFSPFGGGMIFNPFAPRRDIENPGLGVPGGLPR-AAVPPGARFDPFAPPGVG 135
V SDL DP SP P APR + PG P LP + PPG P PP
Sbjct: 49 VDPSDLPDPSSP--------PPAPRPSGQPPGPQGPSDLPGPSGAPPGPPH-PSGPPHRP 99
Query: 134 EPIPGRR 114
P P RR
Sbjct: 100 HPHPSRR 106
Score = 29.1 bits (62), Expect = 3.7
Identities = 23/68 (33%), Positives = 27/68 (39%), Gaps = 1/68 (1%)
Frame = -1
Query: 329 AVPPGRNVGHSDLDPFSPFGGGM-IFNPFAPRRDIENPGLGVPGGLPRAAVPPGARFDPF 153
A P G G D P GG +F+P PG P G P + PPG F+P
Sbjct: 145 APPSGGPPGPFDPSGAPPSGGPPGLFDPSGAPPSGGPPGPFGPSGAPPSGGPPGP-FNPS 203
Query: 152 APPGVGEP 129
P G P
Sbjct: 204 EAPPSGGP 211
Score = 29.1 bits (62), Expect = 3.7
Identities = 24/62 (38%), Positives = 28/62 (45%), Gaps = 7/62 (11%)
Frame = -1
Query: 287 PFSPFGG---GMIFNPFAPRRDIEN---PGLGVPGGLPRAAVPPGARFDPF-APPGVGEP 129
PF+P G G PF P + PG P G P + PPG FDP APP P
Sbjct: 469 PFNPSGAPPSGGPPGPFDPSGAPPSGGPPGPFNPSGAPPSGGPPGP-FDPSGAPPSGMPP 527
Query: 128 IP 123
+P
Sbjct: 528 VP 529
>Z70038-1|CAA93884.1| 2219|Caenorhabditis elegans Hypothetical
protein ZK1067.2 protein.
Length = 2219
Score = 32.3 bits (70), Expect = 0.39
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +1
Query: 199 PPGTPRPGFSMSRRGANGLNIIPPPKGENGSRSEWPTLRPGG 324
PPG P PG S+S GL+ + P + S + T +P G
Sbjct: 7 PPGLPPPGISISNSSPPGLSSVSPIPRADTRESRYSTPQPPG 48
>Z49907-2|CAA90084.1| 324|Caenorhabditis elegans Hypothetical
protein B0491.2 protein.
Length = 324
Score = 31.5 bits (68), Expect = 0.69
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Frame = +1
Query: 157 GSKRAPGGTAALGNPPGTPRPGFSMSRRGANGLNII--PPPKGENGSRSEWPTLRPG 321
G + PG GNP +PG + + + I P P GE G +E P RPG
Sbjct: 184 GPRGLPGPRGQNGNPGRDGQPGHPGEQGSSGQIGKIGEPGPPGEKGRDAEHPIGRPG 240
>U55366-4|AAA97982.1| 310|Caenorhabditis elegans Collagen protein
139 protein.
Length = 310
Score = 31.5 bits (68), Expect = 0.69
Identities = 25/62 (40%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Frame = +1
Query: 151 ANGSKRAPGGTAALGNP--PGTP-RPGFSMSRRGANGLNIIPPPKGENG-SRSEWPTLRP 318
A G K APGG G PG +PG S S G G N P P+G G + S +P
Sbjct: 192 APGPKGAPGGPGQPGRDGQPGQAGQPGSSSSEPGQPGPNGQPGPRGPPGQAGSPGGNGQP 251
Query: 319 GG 324
GG
Sbjct: 252 GG 253
>Z54237-5|CAN86900.1| 273|Caenorhabditis elegans Hypothetical
protein T11B7.3b protein.
Length = 273
Score = 31.1 bits (67), Expect = 0.91
Identities = 17/56 (30%), Positives = 23/56 (41%)
Frame = +1
Query: 154 NGSKRAPGGTAALGNPPGTPRPGFSMSRRGANGLNIIPPPKGENGSRSEWPTLRPG 321
+G+ APG + + PG P P GA G + P G +G R PG
Sbjct: 162 DGASGAPGAASQIHGKPGLPGPPGDAGAPGAPGQDGAPGHPGADGQRQRGQPGPPG 217
>Z54237-4|CAN86899.1| 297|Caenorhabditis elegans Hypothetical
protein T11B7.3a protein.
Length = 297
Score = 31.1 bits (67), Expect = 0.91
Identities = 17/56 (30%), Positives = 23/56 (41%)
Frame = +1
Query: 154 NGSKRAPGGTAALGNPPGTPRPGFSMSRRGANGLNIIPPPKGENGSRSEWPTLRPG 321
+G+ APG + + PG P P GA G + P G +G R PG
Sbjct: 162 DGASGAPGAASQIHGKPGLPGPPGDAGAPGAPGQDGAPGHPGADGQRQRGQPGPPG 217
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 31.1 bits (67), Expect = 0.91
Identities = 27/85 (31%), Positives = 33/85 (38%), Gaps = 6/85 (7%)
Frame = -1
Query: 350 PDSQDLWAVPP----GRNVGHSDLDPFSPFGGGMIFNP--FAPRRDIENPGLGVPGGLPR 189
P S +W PP GR G + P F P PG+ PGG+P
Sbjct: 290 PPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMP- 348
Query: 188 AAVPPGARFDPFAPPGVGEPIPGRR 114
PP R+ P A PG+ P P R
Sbjct: 349 --PPPPPRY-PSAGPGMYPPPPPSR 370
>Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 31.1 bits (67), Expect = 0.91
Identities = 19/58 (32%), Positives = 21/58 (36%)
Frame = +1
Query: 151 ANGSKRAPGGTAALGNPPGTPRPGFSMSRRGANGLNIIPPPKGENGSRSEWPTLRPGG 324
A GS + GG A PP P P + S G P P G S S P G
Sbjct: 608 AGGSNYSGGGETAPAAPPPAPEPAQTYSGAGGESAAAAPAPSGGGYSGSGGAGGAPNG 665
>Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 31.1 bits (67), Expect = 0.91
Identities = 19/58 (32%), Positives = 21/58 (36%)
Frame = +1
Query: 151 ANGSKRAPGGTAALGNPPGTPRPGFSMSRRGANGLNIIPPPKGENGSRSEWPTLRPGG 324
A GS + GG A PP P P + S G P P G S S P G
Sbjct: 608 AGGSNYSGGGETAPAAPPPAPEPAQTYSGAGGESAAAAPAPSGGGYSGSGGAGGAPNG 665
>U80451-8|AAB37842.2| 288|Caenorhabditis elegans Collagen protein
20 protein.
Length = 288
Score = 31.1 bits (67), Expect = 0.91
Identities = 25/69 (36%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
Frame = -1
Query: 323 PPGRNVGHSDLDPFSPFGGGMIFNPFAPRRDI-ENPGLGVPG--GLPRAAV-PPGARFDP 156
PPG GH + P G P P+ + E+ G G PG G R+ PPG P
Sbjct: 160 PPGPPGGHGEPGPAGRGGPRGPPGPGGPQGEAGEDGGAGNPGTPGQVRSLPSPPGEPGQP 219
Query: 155 FAPPGVGEP 129
P G GEP
Sbjct: 220 GEPGGPGEP 228
>U40060-2|AAP82656.1| 108|Caenorhabditis elegans Collagen protein
172, isoform b protein.
Length = 108
Score = 31.1 bits (67), Expect = 0.91
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +1
Query: 178 GTAALGNPPGTP-RPGFSMSRRGANGLNIIPPPKGENGSRSEWPTLRPGG 324
G A PPG P PG +RGA G++ +P P+G G + + P G
Sbjct: 31 GPAGPAGPPGLPGTPG----KRGARGMDGLPGPQGAPGQQGDSGLSGPDG 76
>U40060-1|AAA81141.1| 341|Caenorhabditis elegans Collagen protein
172, isoform a protein.
Length = 341
Score = 31.1 bits (67), Expect = 0.91
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +1
Query: 178 GTAALGNPPGTP-RPGFSMSRRGANGLNIIPPPKGENGSRSEWPTLRPGG 324
G A PPG P PG +RGA G++ +P P+G G + + P G
Sbjct: 264 GPAGPAGPPGLPGTPG----KRGARGMDGLPGPQGAPGQQGDSGLSGPDG 309
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 31.1 bits (67), Expect = 0.91
Identities = 27/85 (31%), Positives = 33/85 (38%), Gaps = 6/85 (7%)
Frame = -1
Query: 350 PDSQDLWAVPP----GRNVGHSDLDPFSPFGGGMIFNP--FAPRRDIENPGLGVPGGLPR 189
P S +W PP GR G + P F P PG+ PGG+P
Sbjct: 300 PPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMP- 358
Query: 188 AAVPPGARFDPFAPPGVGEPIPGRR 114
PP R+ P A PG+ P P R
Sbjct: 359 --PPPPPRY-PSAGPGMYPPPPPSR 380
>AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical
protein Y63D3A.5 protein.
Length = 486
Score = 30.3 bits (65), Expect = 1.6
Identities = 20/55 (36%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Frame = +1
Query: 151 ANGSKRAPGGTAALGNPP--GTPRPGFSMSRRGANGLNIIPPPKGENGSRSEWPT 309
A G+ + PGG G PP G PG +G G PPP G G+ PT
Sbjct: 396 AFGAPQGPGGPGGYGPPPPGGPGAPGSYGPPQGGPG-GFGPPPPGGPGAYGPPPT 449
>AL032627-21|CAD66221.1| 289|Caenorhabditis elegans Hypothetical
protein Y41C4A.19 protein.
Length = 289
Score = 30.3 bits (65), Expect = 1.6
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = +1
Query: 157 GSKRAPGGTAALGNP--PGTPRPGFSMSRRGANGLNIIPPPKGENGSRSE 300
GS APG G P PG+ P + + GANG P G++G E
Sbjct: 216 GSSGAPGAPGGPGFPGAPGSKGPSGAPGQPGANGNPGAPGQPGQSGGSGE 265
>AF099925-3|AAC69507.1| 394|Caenorhabditis elegans Collagen protein
69 protein.
Length = 394
Score = 30.3 bits (65), Expect = 1.6
Identities = 20/57 (35%), Positives = 22/57 (38%), Gaps = 2/57 (3%)
Frame = +1
Query: 157 GSKRAPG--GTAALGNPPGTPRPGFSMSRRGANGLNIIPPPKGENGSRSEWPTLRPG 321
G PG G +PPG P P G G N P KGE G+ S PG
Sbjct: 199 GPSGIPGLPGNPGYTSPPGLPGPPGPCGEAGREGPNGTPGLKGEPGNNSIRQISLPG 255
>L15419-1|AAA17726.1| 308|Caenorhabditis elegans col-40 collagen
protein.
Length = 308
Score = 29.9 bits (64), Expect = 2.1
Identities = 19/53 (35%), Positives = 22/53 (41%)
Frame = -1
Query: 281 SPFGGGMIFNPFAPRRDIENPGLGVPGGLPRAAVPPGARFDPFAPPGVGEPIP 123
+P G NP AP + E PG P G PPG +P G EP P
Sbjct: 211 NPGTDGAPGNPGAPGQVTETPGTPGPAGAAGPPGPPGPAGNP-GSAGASEPGP 262
>AL132952-24|CAB61143.2| 351|Caenorhabditis elegans Hypothetical
protein Y51H4A.9 protein.
Length = 351
Score = 29.9 bits (64), Expect = 2.1
Identities = 18/53 (33%), Positives = 23/53 (43%)
Frame = -1
Query: 278 PFGGGMIFNPFAPRRDIENPGLGVPGGLPRAAVPPGARFDPFAPPGVGEPIPG 120
P G + P AP + ++ PG P G P PPG P P G +PG
Sbjct: 255 PGSNGNVGAPGAPGQVVDVPGAPGPAGPPG---PPGPSGAPGHPGQAGSSLPG 304
>AF026211-4|AAB71295.1| 416|Caenorhabditis elegans Collagen protein
40 protein.
Length = 416
Score = 29.9 bits (64), Expect = 2.1
Identities = 19/53 (35%), Positives = 22/53 (41%)
Frame = -1
Query: 281 SPFGGGMIFNPFAPRRDIENPGLGVPGGLPRAAVPPGARFDPFAPPGVGEPIP 123
+P G NP AP + E PG P G PPG +P G EP P
Sbjct: 221 NPGTDGAPGNPGAPGQVTETPGTPGPAGAAGPPGPPGPAGNP-GSAGASEPGP 272
>Z81479-3|CAB03942.1| 283|Caenorhabditis elegans Hypothetical
protein C34F6.3 protein.
Length = 283
Score = 29.5 bits (63), Expect = 2.8
Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Frame = +1
Query: 151 ANGSKRAPGGTAALGNP--PGTPRPGFSMSRRGANGLNIIPPPKGENGSRSE 300
A ++ AP G P PG+P R G G N P P G+NG + E
Sbjct: 198 AGQTRSAPSPPGQPGQPGEPGSPGEPGPDGRAGHPGRNGPPGPPGDNGGQGE 249
>Z81479-2|CAB03941.1| 283|Caenorhabditis elegans Hypothetical
protein C34F6.2 protein.
Length = 283
Score = 29.5 bits (63), Expect = 2.8
Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Frame = +1
Query: 151 ANGSKRAPGGTAALGNP--PGTPRPGFSMSRRGANGLNIIPPPKGENGSRSE 300
A ++ AP G P PG+P R G G N P P G+NG + E
Sbjct: 198 AGQTRSAPSPPGQPGQPGEPGSPGEPGPDGRAGHPGRNGPPGPPGDNGGQGE 249
>Z69787-1|CAA93642.1| 300|Caenorhabditis elegans Hypothetical
protein C44C10.1 protein.
Length = 300
Score = 29.5 bits (63), Expect = 2.8
Identities = 19/55 (34%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
Frame = +1
Query: 172 PGGTAALGNPPGTPRPGFSMSRRGANGLNIIPPPKGENGSR-SEWPTLRPGGTAH 333
P G A PG P S G NG P G NG+ ++ T PGG H
Sbjct: 236 PAGPAGSPGAPGNPGSQGSQGPVGDNGAAGAPGQPGGNGNNGADGETGAPGGCDH 290
>U23520-6|AAC46553.1| 287|Caenorhabditis elegans Collagen protein
175 protein.
Length = 287
Score = 29.5 bits (63), Expect = 2.8
Identities = 19/51 (37%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Frame = +1
Query: 172 PGGTAALGNPPGTPRPGFSMSRRGANGLNIIPPPKGENG-SRSEWPTLRPG 321
P G PPG P G +RG G P P GE G + P RPG
Sbjct: 149 PRGPRGDAGPPGPPGNGGRPGQRGTPGEAGTPGPVGEPGETGGPGPQGRPG 199
>Z46791-2|CAA86756.1| 283|Caenorhabditis elegans Hypothetical
protein C09G5.3 protein.
Length = 283
Score = 29.1 bits (62), Expect = 3.7
Identities = 21/50 (42%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = +1
Query: 157 GSKRAPGGTAALGNPPGTP-RPGFSMSRR-GANGLNIIPPPKGENGSRSE 300
G APGG G PPGTP RPG + G G P G +G R E
Sbjct: 175 GKSGAPGGKGPQG-PPGTPGRPGQPGRKAIGEAGPKGPPGAPGTDGRRGE 223
>Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical
protein K04H4.1a protein.
Length = 1759
Score = 29.1 bits (62), Expect = 3.7
Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = +1
Query: 154 NGSKRAPG-GTAALGNPPGTPRPGFSMSRRGANGLNIIPPPKGENGSRSE 300
+G K PG G +G P T PG G G++ P P G NG R E
Sbjct: 487 SGEKGFPGTGVNKVGPPGMTGLPG-EPGMPGRIGVDGYPGPPGNNGERGE 535
>X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV)
collagen protein.
Length = 1758
Score = 29.1 bits (62), Expect = 3.7
Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = +1
Query: 154 NGSKRAPG-GTAALGNPPGTPRPGFSMSRRGANGLNIIPPPKGENGSRSE 300
+G K PG G +G P T PG G G++ P P G NG R E
Sbjct: 486 SGEKGFPGTGVNKVGPPGMTGLPG-EPGMPGRIGVDGYPGPPGNNGERGE 534
>U80451-9|AAB37843.1| 285|Caenorhabditis elegans Collagen protein
73 protein.
Length = 285
Score = 29.1 bits (62), Expect = 3.7
Identities = 20/58 (34%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Frame = +1
Query: 154 NGSKRAPGGTAALGNPPGTPRPGFSMSRRGANG-LNIIPPPKGENGSRSEWPTLRPGG 324
NG APG G PPGT + + GA G + +P P G G E P G
Sbjct: 170 NGRPGAPGAPGPQG-PPGTAGNDGTPGQPGAPGQVRTVPAPPGNPGQPGEPGAQGPPG 226
>U52002-6|AAB37732.1| 142|Caenorhabditis elegans Hypothetical
protein F08B4.7 protein.
Length = 142
Score = 29.1 bits (62), Expect = 3.7
Identities = 20/68 (29%), Positives = 26/68 (38%), Gaps = 2/68 (2%)
Frame = -1
Query: 320 PGRNVGHSDLDPFS--PFGGGMIFNPFAPRRDIENPGLGVPGGLPRAAVPPGARFDPFAP 147
P +G + + P P GG P R PG+G PG P PG P
Sbjct: 67 PRTTMGMAPVPPVGHHPMMGGPPGMPMMAPRPFPGPGVGFPGA-PGMPPFPGGPMGMAGP 125
Query: 146 PGVGEPIP 123
PG+ +P
Sbjct: 126 PGMPPMMP 133
>L11247-3|AAA28008.1| 278|Caenorhabditis elegans Collagen protein
91 protein.
Length = 278
Score = 29.1 bits (62), Expect = 3.7
Identities = 14/41 (34%), Positives = 17/41 (41%)
Frame = +1
Query: 166 RAPGGTAALGNPPGTPRPGFSMSRRGANGLNIIPPPKGENG 288
+ P G A PG P P + GA+G P P G G
Sbjct: 133 QCPAGEAGPAGAPGAPGPAGPDGQPGADGQGGAPGPAGPEG 173
>AF047652-5|AAC04391.2| 449|Caenorhabditis elegans Hypothetical
protein C34H4.2 protein.
Length = 449
Score = 29.1 bits (62), Expect = 3.7
Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Frame = +1
Query: 175 GGTAALGNPPGTPRPGFSM-SRRGANGLNIIPPPKGENGSRSEWPTLRPGGT 327
GG A+ P PG S S G +G ++ PP G S + P GT
Sbjct: 369 GGKASTTPSSAPPAPGSSSASPTGTSGSSVSPPASGPTTSMPAQASTTPSGT 420
>Z35719-1|CAA84800.1| 296|Caenorhabditis elegans Hypothetical
protein F17C8.2 protein.
Length = 296
Score = 28.7 bits (61), Expect = 4.8
Identities = 17/50 (34%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
Frame = +1
Query: 157 GSKRAPG--GTAALGNPPGTPRPGFSMSRRGANGLNIIPPPKGENGSRSE 300
GS PG G A PPG P P G G N P G++G + +
Sbjct: 165 GSDGQPGAPGDAGKDGPPGPPGPDGDSGPNGEAGPNGEPGAPGKDGEKGK 214
>AF308860-1|AAG45416.1| 1475|Caenorhabditis elegans SOP-3 protein.
Length = 1475
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -1
Query: 221 PGLGVPGGLPRAAVPPGARFDPFAPP 144
PG PG LP ++ P G R P PP
Sbjct: 1299 PGPPAPGNLPGSSRPSGNRKQPLPPP 1324
>AC024201-13|AAF36027.2| 1475|Caenorhabditis elegans Suppressor of
pal-1 protein 3,isoform a protein.
Length = 1475
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -1
Query: 221 PGLGVPGGLPRAAVPPGARFDPFAPP 144
PG PG LP ++ P G R P PP
Sbjct: 1299 PGPPAPGNLPGSSRPSGNRKQPLPPP 1324
>Z99942-1|CAB17068.2| 454|Caenorhabditis elegans Hypothetical
protein H13N06.2 protein.
Length = 454
Score = 28.3 bits (60), Expect = 6.4
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = +1
Query: 181 TAALGNPPGTPRPGFSMSRRGANGLNIIPPPKGENGSRSEWPT 309
T +L PPGT P S + NG + PP + S P+
Sbjct: 78 TNSLPMPPGTSTPSLSSAENSGNGPHPPAPPPQSSAESSGLPS 120
>Z81138-4|CAB03474.1| 304|Caenorhabditis elegans Hypothetical
protein W05B2.6 protein.
Length = 304
Score = 28.3 bits (60), Expect = 6.4
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = +1
Query: 160 SKRAPGGTAALGNPPGTPRPGFSMSRRGANGLNIIPPPKGENGS 291
S+ +PG G P G P P S G G P PKG +G+
Sbjct: 215 SESSPGAPGQAG-PQGPPGPAGSPGAPGGPGQAGAPGPKGPSGA 257
>Z81138-3|CAB63321.1| 304|Caenorhabditis elegans Hypothetical
protein W05B2.5 protein.
Length = 304
Score = 28.3 bits (60), Expect = 6.4
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = +1
Query: 160 SKRAPGGTAALGNPPGTPRPGFSMSRRGANGLNIIPPPKGENGS 291
S+ +PG G P G P P S G G P PKG +G+
Sbjct: 215 SESSPGAPGQAG-PQGPPGPAGSPGAPGGPGQAGAPGPKGPSGA 257
>Z81138-1|CAB03475.1| 304|Caenorhabditis elegans Hypothetical
protein W05B2.1 protein.
Length = 304
Score = 28.3 bits (60), Expect = 6.4
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = +1
Query: 160 SKRAPGGTAALGNPPGTPRPGFSMSRRGANGLNIIPPPKGENGS 291
S+ +PG G P G P P S G G P PKG +G+
Sbjct: 215 SESSPGAPGQAG-PQGPPGPAGSPGAPGGPGQAGAPGPKGPSGA 257
>Z67990-1|CAA91932.1| 316|Caenorhabditis elegans Hypothetical
protein F02D10.1 protein.
Length = 316
Score = 28.3 bits (60), Expect = 6.4
Identities = 26/73 (35%), Positives = 28/73 (38%)
Frame = -1
Query: 350 PDSQDLWAVPPGRNVGHSDLDPFSPFGGGMIFNPFAPRRDIENPGLGVPGGLPRAAVPPG 171
P Q A PPG D P P G G +P P PG P G P A PPG
Sbjct: 160 PPCQPCPAGPPGPP--GPDGTPGEPGGPGPAGSPAGP----SGPG---PAGPPGPAGPPG 210
Query: 170 ARFDPFAPPGVGE 132
P P G G+
Sbjct: 211 NDGQPGQPGGPGQ 223
>U58736-1|AAB00598.1| 302|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 3 protein.
Length = 302
Score = 28.3 bits (60), Expect = 6.4
Identities = 21/58 (36%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Frame = +1
Query: 151 ANGSKRAPGG--TAALGNPPGTPRPGFSMSRRGANGLNIIPPPKGENGSRSEWPTLRP 318
AN A G T +G PPG P P R GA G P P G +G+ P +P
Sbjct: 95 ANPPSSAAGSCCTCQVG-PPGPPGPPGRDGRPGAPGRPGNPGPPGRDGALLPGPPPKP 151
>U23172-13|ABH03527.1| 282|Caenorhabditis elegans Hypothetical
protein F25B5.7c protein.
Length = 282
Score = 28.3 bits (60), Expect = 6.4
Identities = 26/76 (34%), Positives = 29/76 (38%), Gaps = 8/76 (10%)
Frame = -1
Query: 323 PPGRNVG-HSDLDPFSPFGGGMIFNPFAP--RRDIENPGLGVPGGLPRAAVPP----GAR 165
PPG G PF+P GG M P P P P G+ P G
Sbjct: 102 PPGMPGGVPPQAQPFNPHGGSMFGGPGGPGGPPPFGQPFQQAPQGMFNVPTGPPPLMGGG 161
Query: 164 FDPFAPP-GVGEPIPG 120
DP PP G+G P PG
Sbjct: 162 GDPRGPPGGMGGP-PG 176
>U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical
protein F25B5.7a protein.
Length = 562
Score = 28.3 bits (60), Expect = 6.4
Identities = 26/76 (34%), Positives = 29/76 (38%), Gaps = 8/76 (10%)
Frame = -1
Query: 323 PPGRNVG-HSDLDPFSPFGGGMIFNPFAP--RRDIENPGLGVPGGLPRAAVPP----GAR 165
PPG G PF+P GG M P P P P G+ P G
Sbjct: 382 PPGMPGGVPPQAQPFNPHGGSMFGGPGGPGGPPPFGQPFQQAPQGMFNVPTGPPPLMGGG 441
Query: 164 FDPFAPP-GVGEPIPG 120
DP PP G+G P PG
Sbjct: 442 GDPRGPPGGMGGP-PG 456
>AC024811-5|AAF60775.1| 285|Caenorhabditis elegans Collagen protein
48 protein.
Length = 285
Score = 28.3 bits (60), Expect = 6.4
Identities = 17/49 (34%), Positives = 21/49 (42%)
Frame = +1
Query: 190 LGNPPGTPRPGFSMSRRGANGLNIIPPPKGENGSRSEWPTLRPGGTAHR 336
LG PPG P G NG + P P+G +G P +PG R
Sbjct: 147 LGGPPGPPGQDGIPGNPGRNGEDGAPGPQGPSGPPG--PPGQPGQPGQR 193
>Z82268-5|CAB05195.1| 304|Caenorhabditis elegans Hypothetical
protein F52B11.4 protein.
Length = 304
Score = 27.9 bits (59), Expect = 8.5
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Frame = -1
Query: 281 SPFGGGMIFNPFAPRRDIENPGL-GVPGGLPRAAVPPGARFDPFAPPGVGEP-IPGRR 114
+P G P P D ++ + G PG PPG P AP G G+P PG++
Sbjct: 196 APGNPGQAGAPGQPGADAQSESIPGAPGQAGPQG-PPGPAGSPGAPGGPGQPGAPGQK 252
>Z81567-3|CAB04587.1| 301|Caenorhabditis elegans Hypothetical
protein K08C9.4 protein.
Length = 301
Score = 27.9 bits (59), Expect = 8.5
Identities = 17/52 (32%), Positives = 21/52 (40%), Gaps = 2/52 (3%)
Frame = +1
Query: 151 ANGSKRAPG--GTAALGNPPGTPRPGFSMSRRGANGLNIIPPPKGENGSRSE 300
A G PG G A + PG P G +G P P G+NG R +
Sbjct: 153 APGPDGQPGQDGPAGIDGAPGEAGPQGDAGAAGQDGEAGAPGPAGKNGQRGQ 204
>Z73969-6|CAA98236.1| 295|Caenorhabditis elegans Hypothetical
protein C12D8.8 protein.
Length = 295
Score = 27.9 bits (59), Expect = 8.5
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +1
Query: 157 GSKRAPGGTAALGNPPGTPRPGFSMSRRGANGLNIIPPPKGENG 288
G A G +G+ +PG+S RG +G +P P GENG
Sbjct: 152 GPVGAIGPMGPIGSMGRAGQPGYS-GPRGNDGFPGLPGPPGENG 194
>Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical
protein W01B6.7 protein.
Length = 301
Score = 27.9 bits (59), Expect = 8.5
Identities = 22/60 (36%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Frame = -1
Query: 305 GHSDLDPFSPFG-GGMIFNPFAPRRDIENPGLGVPGGLPRAAVPPGARFDPFAPPGVGEP 129
G + P P G G N AP PG P G P AA PGA +P P G+P
Sbjct: 216 GPGEPGPAGPPGPAGPAGNDGAPGTG--GPGPAGPKGPPGAAGAPGADGNPGGPGTAGKP 273
>Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1759
Score = 27.9 bits (59), Expect = 8.5
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Frame = +1
Query: 178 GTAALGNPPGTP-RPGFSMSRR--GANGLNIIPPPKGENGS 291
G + L PPG P PG + G GL IP PKG+ G+
Sbjct: 765 GDSGLPGPPGLPGHPGVPGDKGFGGVPGLPGIPGPKGDVGN 805
>Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1758
Score = 27.9 bits (59), Expect = 8.5
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Frame = +1
Query: 178 GTAALGNPPGTP-RPGFSMSRR--GANGLNIIPPPKGENGS 291
G + L PPG P PG + G GL IP PKG+ G+
Sbjct: 764 GDSGLPGPPGLPGHPGVPGDKGFGGVPGLPGIPGPKGDVGN 804
>X64435-1|CAA45773.1| 318|Caenorhabditis elegans collagen protein.
Length = 318
Score = 27.9 bits (59), Expect = 8.5
Identities = 20/42 (47%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Frame = +1
Query: 175 GGTAALGNPPGTPRPGFSMSRRGANGL---NIIPP-PKGENG 288
GGT G PPG P P G+NGL N PP P GE G
Sbjct: 209 GGTGIKG-PPGPPGPRGPKGPPGSNGLPSQNSGPPGPIGEMG 249
>V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-2 coding for a collagen.
).
Length = 301
Score = 27.9 bits (59), Expect = 8.5
Identities = 22/60 (36%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Frame = -1
Query: 305 GHSDLDPFSPFG-GGMIFNPFAPRRDIENPGLGVPGGLPRAAVPPGARFDPFAPPGVGEP 129
G + P P G G N AP PG P G P AA PGA +P P G+P
Sbjct: 216 GPGEPGPAGPPGPAGPAGNDGAPGTG--GPGPAGPKGPPGAAGAPGADGNPGGPGTAGKP 273
>U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein 2,
isoform a protein.
Length = 1758
Score = 27.9 bits (59), Expect = 8.5
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Frame = +1
Query: 178 GTAALGNPPGTP-RPGFSMSRR--GANGLNIIPPPKGENGS 291
G + L PPG P PG + G GL IP PKG+ G+
Sbjct: 764 GDSGLPGPPGLPGHPGVPGDKGFGGVPGLPGIPGPKGDVGN 804
>U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein 2,
isoform b protein.
Length = 1759
Score = 27.9 bits (59), Expect = 8.5
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Frame = +1
Query: 178 GTAALGNPPGTP-RPGFSMSRR--GANGLNIIPPPKGENGS 291
G + L PPG P PG + G GL IP PKG+ G+
Sbjct: 765 GDSGLPGPPGLPGHPGVPGDKGFGGVPGLPGIPGPKGDVGN 805
>U41624-3|AAF99944.1| 318|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 7 protein.
Length = 318
Score = 27.9 bits (59), Expect = 8.5
Identities = 20/42 (47%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Frame = +1
Query: 175 GGTAALGNPPGTPRPGFSMSRRGANGL---NIIPP-PKGENG 288
GGT G PPG P P G+NGL N PP P GE G
Sbjct: 209 GGTGIKG-PPGPPGPRGPKGPPGSNGLPSQNSGPPGPIGEMG 249
>U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV)
collagen protein.
Length = 1795
Score = 27.9 bits (59), Expect = 8.5
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Frame = +1
Query: 178 GTAALGNPPGTP-RPGFSMSRR--GANGLNIIPPPKGENGS 291
G + L PPG P PG + G GL IP PKG+ G+
Sbjct: 801 GDSGLPGPPGLPGHPGVPGDKGFGGVPGLPGIPGPKGDVGN 841
>J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 2 (col-2) gene, complete
cds. ).
Length = 301
Score = 27.9 bits (59), Expect = 8.5
Identities = 22/60 (36%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Frame = -1
Query: 305 GHSDLDPFSPFG-GGMIFNPFAPRRDIENPGLGVPGGLPRAAVPPGARFDPFAPPGVGEP 129
G + P P G G N AP PG P G P AA PGA +P P G+P
Sbjct: 216 GPGEPGPAGPPGPAGPAGNDGAPGTG--GPGPAGPKGPPGAAGAPGADGNPGGPGTAGKP 273
>AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen
structural gene, probabledorsal and ventral cuticle
component, from embryo to adult,but maximal in dauer
(28.0 kD) (col-2) protein.
Length = 301
Score = 27.9 bits (59), Expect = 8.5
Identities = 22/60 (36%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Frame = -1
Query: 305 GHSDLDPFSPFG-GGMIFNPFAPRRDIENPGLGVPGGLPRAAVPPGARFDPFAPPGVGEP 129
G + P P G G N AP PG P G P AA PGA +P P G+P
Sbjct: 216 GPGEPGPAGPPGPAGPAGNDGAPGTG--GPGPAGPKGPPGAAGAPGADGNPGGPGTAGKP 273
>AL034543-4|CAA22518.1| 323|Caenorhabditis elegans Hypothetical
protein Y81G3A.5 protein.
Length = 323
Score = 27.9 bits (59), Expect = 8.5
Identities = 19/45 (42%), Positives = 20/45 (44%)
Frame = +1
Query: 157 GSKRAPGGTAALGNPPGTPRPGFSMSRRGANGLNIIPPPKGENGS 291
GS PGG G P GTP G G N+I PP G GS
Sbjct: 175 GSPGPPGGVGPPG-PNGTPGAPGDEGIPGVPGANVICPP-GPAGS 217
>AF067607-9|AAF98609.1| 460|Caenorhabditis elegans Collagen protein
102 protein.
Length = 460
Score = 27.9 bits (59), Expect = 8.5
Identities = 19/60 (31%), Positives = 20/60 (33%)
Frame = +1
Query: 151 ANGSKRAPGGTAALGNPPGTPRPGFSMSRRGANGLNIIPPPKGENGSRSEWPTLRPGGTA 330
A G PG G G PG + ANG I P GE G P G A
Sbjct: 99 AAGEDGTPGEPGTDGEDGGNGMPGVAQMAMDANGGACIKCPAGEPGPPGPEGPAGPAGPA 158
>AF045645-6|AAC02608.1| 314|Caenorhabditis elegans Collagen protein
101 protein.
Length = 314
Score = 27.9 bits (59), Expect = 8.5
Identities = 19/54 (35%), Positives = 22/54 (40%)
Frame = -1
Query: 278 PFGGGMIFNPFAPRRDIENPGLGVPGGLPRAAVPPGARFDPFAPPGVGEPIPGR 117
P G P AP ++ PG P G P A P GA P P G PG+
Sbjct: 218 PGSNGNAGAPGAPGHVVDVPGTPGPAGPPGPAGPAGA---PGQPGQAGHAQPGQ 268
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,656,377
Number of Sequences: 27780
Number of extensions: 421079
Number of successful extensions: 2038
Number of sequences better than 10.0: 61
Number of HSP's better than 10.0 without gapping: 1333
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1975
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -