Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10a20r
         (770 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.4  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   7.3  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    21   9.6  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   9.6  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +3

Query: 165 TCPRGNRSSWQSTWNTQA 218
           TCP G +     TWNT A
Sbjct: 760 TCPAGCKCYNDRTWNTNA 777


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 10/38 (26%), Positives = 16/38 (42%)
 Frame = +3

Query: 78  SWRWKVISVRRWPSSRDGFTNTGGRKRIETCPRGNRSS 191
           +W  K   +   P   +    T G   +ETC R + +S
Sbjct: 189 NWEHKETHIDWQPEDEECTEATAGAVVLETCQRNSNNS 226


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +1

Query: 193 GNPPGTPRPGFSMSRRGANG 252
           G+P  TP P ++ ++ GA G
Sbjct: 105 GSPKLTPYPNWAQNKAGACG 124


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 7/20 (35%), Positives = 15/20 (75%)
 Frame = +1

Query: 577 MFVTARSSDLIKFTIKFPSV 636
           +FV   +S+L++ ++ FPS+
Sbjct: 403 LFVETSASELVESSVLFPSL 422


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 218,906
Number of Sequences: 438
Number of extensions: 5185
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24154023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)