Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10a20r
(770 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g53970.1 68416.m05963 proteasome inhibitor-related similar to... 62 3e-10
At1g60200.1 68414.m06781 splicing factor PWI domain-containing p... 37 0.013
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 35 0.068
At4g03120.1 68417.m00425 proline-rich family protein similar to ... 31 0.64
At5g07570.1 68418.m00867 glycine/proline-rich protein contains s... 30 1.9
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 30 1.9
At2g41480.1 68415.m05124 peroxidase, putative similar to peroxid... 29 2.6
At3g05220.2 68416.m00570 heavy-metal-associated domain-containin... 29 3.4
At3g05220.1 68416.m00569 heavy-metal-associated domain-containin... 29 3.4
At4g19200.1 68417.m02833 proline-rich family protein contains pr... 29 4.5
At5g39480.1 68418.m04781 F-box family protein contains Pfam:PF00... 28 5.9
At5g24390.1 68418.m02875 RabGAP/TBC domain-containing protein si... 28 5.9
At3g14740.2 68416.m01864 PHD finger family protein similar to zi... 28 5.9
At3g14740.1 68416.m01863 PHD finger family protein similar to zi... 28 5.9
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 28 7.9
>At3g53970.1 68416.m05963 proteasome inhibitor-related similar to
proteasome inhibitor PI31 subunit (hPI31) SP:Q92530 from
[Homo sapiens]
Length = 302
Score = 62.5 bits (145), Expect = 3e-10
Identities = 61/217 (28%), Positives = 90/217 (41%), Gaps = 18/217 (8%)
Frame = -1
Query: 713 EGWNDTEN-YRIRYVLE---SKLYILHGLNTDGNLIVNLMRSEDLAVTNIGVKIDEILKE 546
EGWN+ E Y Y SK ++ L D L+V+ + ++ +K+ + +E
Sbjct: 64 EGWNEFEGEYAFVYANPKKGSKKILVKCLAMDDKLLVDAIADGGAEPAHLEIKVGDYAEE 123
Query: 545 SN-GTIDVMMPNYKDFIFVIKRDLIDSITDKPTATSETQTASDHSNTXXXXXXXXXXXXX 369
SN G N + ++ ++ID + KP + +S +N
Sbjct: 124 SNEGDYSAQFKNLDKLVTDLQSEIIDKLDGKPKPVASRAQSSSETNEEPRYYDDTPNPLG 183
Query: 368 XXPGVNPDSQDLWAVPPGRNVGHSDLDP-----FSP----FG-GGMIFNPFAPRRDIENP 219
++P + +P N G+SDL P P FG G M+ P PR
Sbjct: 184 PQ--IHPSGVVVPPIPG--NGGYSDLFPGPGAGMYPGRGGFGDGSMLVGPTDPRFFPFGD 239
Query: 218 GLGVPG--GLPRAAVPP-GARFDPFAPPGVGEPIPGR 117
G PG G P +PP GARFDP+ PPGV PGR
Sbjct: 240 GSDRPGFMGPPHPGMPPPGARFDPYGPPGVPGFEPGR 276
>At1g60200.1 68414.m06781 splicing factor PWI domain-containing
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF01480: PWI domain, PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 899
Score = 37.1 bits (82), Expect = 0.013
Identities = 24/59 (40%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = -1
Query: 299 SDLDPFSPFGGGMIFNPFAPRRDIENPGLGV--PGGLPRAAVPPGARFDPFAPPGVGEP 129
++L P PF GM F P A + +NP GV PG +P+ PG R PF P G P
Sbjct: 71 TNLPPPPPFRPGMQFTPVA---NFQNPSSGVPPPGSMPQYQPQPGMR--PFQPMANGYP 124
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 34.7 bits (76), Expect = 0.068
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = +1
Query: 166 RAPGGTAALGNPPGTPRPGFSMSRR-GANGLNIIP-PPKGENGSRSEWPTLRPG 321
RAPG + +PPG P PG G NG +++P P G P +RPG
Sbjct: 425 RAPGPMSGFHHPPGGPMPGPPQHMYVGQNGASMVPSQPIGYGFQPQFMPGMRPG 478
>At4g03120.1 68417.m00425 proline-rich family protein similar to U1
small nuclear ribonucleoprotein C; contains proline rich
extensin domains, INTERPRO:IPR002965
Length = 207
Score = 31.5 bits (68), Expect = 0.64
Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 6/51 (11%)
Frame = -1
Query: 251 PFAPRRDIENPGLGVPGGLPRAAVPPGARFDP------FAPPGVGEPIPGR 117
P PR + G P G+P+ PPGA P PPG+ PIPG+
Sbjct: 97 PVLPRPMMPPQGYMPPPGVPQMMAPPGAPLPPPPQNGILRPPGMA-PIPGQ 146
>At5g07570.1 68418.m00867 glycine/proline-rich protein contains
similarity to flagelliform silk protein [Nephila
clavipes] gi|7106224|gb|AAF36090
Length = 1504
Score = 29.9 bits (64), Expect = 1.9
Identities = 28/86 (32%), Positives = 36/86 (41%), Gaps = 6/86 (6%)
Frame = -1
Query: 359 GVNPDSQDLWAVPPGRNVGHSDLDPFSPFGGGMIFNPFAPRRDI-ENPGLGV-----PGG 198
G++P + DL G ++G LD + GG PF I + PG G PG
Sbjct: 1090 GISPPNIDLPVA--GTSIG-GPLDEGASDGGPPDVGPFGISPSIIDPPGEGAFDGDPPGK 1146
Query: 197 LPRAAVPPGARFDPFAPPGVGEPIPG 120
LP P G +PPG G P G
Sbjct: 1147 LPLDISPVGKGPSGVSPPGAGPPGDG 1172
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = -1
Query: 212 GVPGGLPRAAVPPGARFDPFAPPGVGEPIP 123
G G PR +PP AR P PP P+P
Sbjct: 533 GSRGRRPRPPLPPPARARPLPPPARARPMP 562
>At2g41480.1 68415.m05124 peroxidase, putative similar to peroxidase
[Spinacia oleracea] gi|1781334|emb|CAA71494
Length = 328
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/64 (21%), Positives = 37/64 (57%), Gaps = 3/64 (4%)
Frame = -1
Query: 632 DGNLIVNLMRSEDLAVTNIGVKIDEILKESNGTIDVMMP---NYKDFIFVIKRDLIDSIT 462
DG++++ +E A+ N+G++ E++ ++ ++ + P + D + + RD +D ++
Sbjct: 77 DGSVLIKGKSAEQAALPNLGLRGLEVIDDAKARLEAVCPGVVSCADILALAARDSVD-LS 135
Query: 461 DKPT 450
D P+
Sbjct: 136 DGPS 139
>At3g05220.2 68416.m00570 heavy-metal-associated domain-containing
protein similar to farnesylated protein 1 (GI:23304411)
{Hordeum vulgare subsp. spontaneum}; contains Pfam
profile PF00403: Heavy-metal-associated domain
Length = 478
Score = 29.1 bits (62), Expect = 3.4
Identities = 17/45 (37%), Positives = 19/45 (42%)
Frame = +1
Query: 157 GSKRAPGGTAALGNPPGTPRPGFSMSRRGANGLNIIPPPKGENGS 291
G PGG G P G PG MS G G + P G+ GS
Sbjct: 330 GGPMGPGGPMGQGGPMGMMGPGGPMSMMGPGG--PMGPMGGQGGS 372
>At3g05220.1 68416.m00569 heavy-metal-associated domain-containing
protein similar to farnesylated protein 1 (GI:23304411)
{Hordeum vulgare subsp. spontaneum}; contains Pfam
profile PF00403: Heavy-metal-associated domain
Length = 577
Score = 29.1 bits (62), Expect = 3.4
Identities = 17/45 (37%), Positives = 19/45 (42%)
Frame = +1
Query: 157 GSKRAPGGTAALGNPPGTPRPGFSMSRRGANGLNIIPPPKGENGS 291
G PGG G P G PG MS G G + P G+ GS
Sbjct: 429 GGPMGPGGPMGQGGPMGMMGPGGPMSMMGPGG--PMGPMGGQGGS 471
>At4g19200.1 68417.m02833 proline-rich family protein contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 179
Score = 28.7 bits (61), Expect = 4.5
Identities = 24/71 (33%), Positives = 31/71 (43%), Gaps = 5/71 (7%)
Frame = -1
Query: 317 GRNVGHSDLDP-FSPFGGGMIFNP----FAPRRDIENPGLGVPGGLPRAAVPPGARFDPF 153
G++ H + + F F GG + P + P+ G GG P A PPGA P
Sbjct: 4 GKDKHHDEQEKGFHGFPGGGHYPPAQGGYPPQGYPPQQGYPPAGGYPPAGYPPGAY--PA 61
Query: 152 APPGVGEPIPG 120
AP G P PG
Sbjct: 62 APGGY-PPAPG 71
>At5g39480.1 68418.m04781 F-box family protein contains Pfam:PF00646
F-box domain ; similar to SKP1 interacting partner 2
(SKIP2) TIGR_Ath1:At5g67250
Length = 568
Score = 28.3 bits (60), Expect = 5.9
Identities = 27/110 (24%), Positives = 48/110 (43%)
Frame = -1
Query: 761 DERXITGDEPKSELLPEGWNDTENYRIRYVLESKLYILHGLNTDGNLIVNLMRSEDLAVT 582
D + +E E G E Y RY SK L + D L+ + + + +T
Sbjct: 463 DPFPVDANETHFENSYSGEGIAEGYSFRYT-GSKPGSLFVITND--LLAFVWKETKVVIT 519
Query: 581 NIGVKIDEILKESNGTIDVMMPNYKDFIFVIKRDLIDSITDKPTATSETQ 432
+ + EILK+ G+ +P K+F + ++R I+ T T +S ++
Sbjct: 520 LQRLNLTEILKKGLGSCVPPLPPSKNFTY-MRRSFINEFTKLSTDSSYSE 568
>At5g24390.1 68418.m02875 RabGAP/TBC domain-containing protein
similar to GTPase activating protein [Yarrowia
lipolytica] GI:2370595; contains Pfam profile PF00566:
TBC domain
Length = 528
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Frame = +3
Query: 192 WQSTWNTQAWV---LNVSTWSKRVKYHSTPERRERIEI*MANVTARR 323
W+ W QA + + S+WS+R+K + P + + A+V RR
Sbjct: 432 WEVIWADQAAIRAGMGKSSWSRRIKQRAPPTEDLLLYVVAASVLQRR 478
>At3g14740.2 68416.m01864 PHD finger family protein similar to
zinc-finger protein BR140 [PIR|JC2069][Homo sapiens];
contains PHD-finger domain PF00628
Length = 343
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -1
Query: 350 PDSQDLWAVPPGRNVGHSDLDPFSPFGGGMIFNPFAPRRDIE 225
P + +WA+ P G + PFSPF + + P+ + IE
Sbjct: 68 PAKKRIWAIDPDLLSGGGN--PFSPFDLNVEYKPYVEEKSIE 107
>At3g14740.1 68416.m01863 PHD finger family protein similar to
zinc-finger protein BR140 [PIR|JC2069][Homo sapiens];
contains PHD-finger domain PF00628
Length = 341
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -1
Query: 350 PDSQDLWAVPPGRNVGHSDLDPFSPFGGGMIFNPFAPRRDIE 225
P + +WA+ P G + PFSPF + + P+ + IE
Sbjct: 68 PAKKRIWAIDPDLLSGGGN--PFSPFDLNVEYKPYVEEKSIE 107
>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
similar to oligouridylate binding protein [Nicotiana
plumbaginifolia] GI:6996560; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 419
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/28 (53%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Frame = +1
Query: 157 GSKRAPGGTAALGNPPGTPR--PGFSMS 234
GSK P GTA+ PP P PGFS S
Sbjct: 333 GSKPTPAGTASNPLPPPAPAPIPGFSAS 360
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,607,908
Number of Sequences: 28952
Number of extensions: 379169
Number of successful extensions: 1242
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1241
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1716774400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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