Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10a20f
         (641 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G6.17 |pof8||F-box protein Pof8|Schizosaccharomyces pombe|...    27   3.0  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    26   5.3  
SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb...    25   7.0  
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb...    25   7.0  
SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|ch...    25   9.3  
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    25   9.3  
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce...    25   9.3  
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    25   9.3  

>SPAC17G6.17 |pof8||F-box protein Pof8|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 402

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
 Frame = +1

Query: 115 FLSNIATIVDIYYSQNGIRPAVWLGFNIQNN--*EGYKKTV*HNNCFYSLEF 264
           FLS + +I++IY+ +   +  V L F IQ +   +G +     NN  Y+L +
Sbjct: 70  FLSAVDSILEIYFHRERQKEKVHLAFLIQQDDFWKGIRPNPTQNNLKYALSY 121


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 3227

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -2

Query: 553 FVIRHHDVYGSI*FFQYFVYLYTYVRN 473
           F++ HH+VYGS  F      + T++ N
Sbjct: 533 FLLEHHEVYGSNLFASTTNIMSTFIHN 559


>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1073

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 9/28 (32%), Positives = 19/28 (67%)
 Frame = +2

Query: 506 LKESNGTIDVMMPNYKDFIFVIKRDLID 589
           L E +G  + ++  Y + IF++K+DL++
Sbjct: 502 LLEVSGDEEFVLAAYNELIFIVKKDLMN 529


>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1254

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = +1

Query: 4    IACLLLEHMIQNIGEPFF*SYHNNSAVLKYFERI*QVFLSNIATIVD 144
            IA  +L H++ NIG   F S H  S  + +     QV L  +A  VD
Sbjct: 1117 IAYAVLHHLVSNIGCLGFFSTHYQSLCVDFMHHR-QVRLMQMAAAVD 1162


>SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 716

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +2

Query: 242 IAFIHWNLTRRGFRSIGLSDERTITGDEPKSELLP 346
           I  I W  T    + I  +  R + GDEP+ E  P
Sbjct: 638 IVMIPWCNTTECEKEIKKNSARQVNGDEPEDEKAP 672


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2100

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
 Frame = -2

Query: 124  LIETLVKSVQSISRQLSCCDNFKKM---VPLCFVSYVQAI 14
            L+ET+ KSV   S  LS  DN +++   + + FVS+V  +
Sbjct: 1559 LVETMNKSVSPASEILSDLDNKQQLNDQIIIVFVSWVHLL 1598


>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1297

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +1

Query: 67  HNNSAVLKYFERI*QVFLSNIATIVDI 147
           H+ SAVL++ +R+      NIA+ VD+
Sbjct: 521 HDGSAVLRFIDRVNFTKNLNIASAVDV 547


>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 897

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = +2

Query: 299 DERTITGDEPKSELLPEGWNDTENYRIRYVLESKLYILHGLNT 427
           +ER ++    K +L+ E  +  EN  +  + + +L  L GLN+
Sbjct: 855 EERIVSVQRKKRQLVKEALDSNENNPLSRLDKEELLYLFGLNS 897


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,586,257
Number of Sequences: 5004
Number of extensions: 52507
Number of successful extensions: 146
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)