Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10a20f
         (641 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0667 + 16781857-16782001,16784506-16784544,16785229-167859...    28   5.5  
02_05_1336 + 35773629-35773856,35773931-35774085,35774217-357745...    28   5.5  
06_01_0062 - 529833-530917,531392-531434                               28   7.2  

>05_03_0667 +
           16781857-16782001,16784506-16784544,16785229-16785910,
           16786003-16786087,16786747-16786888,16787391-16787575,
           16788011-16788143,16788317-16788405,16788530-16788604,
           16789060-16789173,16789264-16789305
          Length = 576

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -2

Query: 124 LIETLVKSVQSISRQLSCCDNFKKMVPLCFVSYVQAIDMQ 5
           L E   K + S  R++ C  N  K+   CF SY   +D+Q
Sbjct: 446 LYEDDPKVLDSCFRRIMCSSNILKLELKCFQSYEMLLDIQ 485


>02_05_1336 +
           35773629-35773856,35773931-35774085,35774217-35774549,
           35774615-35774927,35776992-35777168,35777281-35777397,
           35777532-35777698,35777800-35778024,35778127-35778448,
           35778542-35778786,35778993-35779131,35779212-35779304,
           35779509-35779577
          Length = 860

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
 Frame = +2

Query: 254 HWNLTRRGFRSIGLSDERTITGDEPKSELLP--EGWNDTENYRIRYVLESKLYILHGLNT 427
           H N+ R  F++    D + +     + ++ P  E +    + +I  +LE K  ++ G  T
Sbjct: 368 HSNILRVPFKT---EDGKVLPQWVSRFDIYPYLERYAQDSSVKILEILEGKPDLVIGNYT 424

Query: 428 DGNLIVNLMRSEDLAVT 478
           DGNL+ +L+ S+ L VT
Sbjct: 425 DGNLVASLLTSK-LGVT 440


>06_01_0062 - 529833-530917,531392-531434
          Length = 375

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
 Frame = +2

Query: 263 LTRRGFRSIGLSDERTITG-DEPKSELLPEGWNDTEN--YRIRYVLES 397
           L R G  S G  DE   T   +P+  L P+GW D E+   R+R++L +
Sbjct: 94  LVRHG-ESEGNVDEAAYTRVPDPRIGLTPQGWRDAEDCGRRLRHLLST 140


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,190,246
Number of Sequences: 37544
Number of extensions: 287538
Number of successful extensions: 565
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 565
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)