Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10a20f
         (641 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11654| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.20 
SB_41673| Best HMM Match : Glyco_hydro_38 (HMM E-Value=2.3e-24)        31   1.1  
SB_27467| Best HMM Match : ANF_receptor (HMM E-Value=6.9e-19)          29   2.4  
SB_58699| Best HMM Match : UCR_14kD (HMM E-Value=3.6e-37)              29   3.2  
SB_19618| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.4  
SB_26407| Best HMM Match : UQ_con (HMM E-Value=0)                      28   7.4  

>SB_11654| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1161

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
 Frame = +2

Query: 272 RGFRSIGLSDERTIT--GDEPKSELLPEGWNDTENYRIRYVLESKLYILHGLNTDG 433
           +G   + L+D R +T    EP S L+P  W +  N+    VL++ L +   L+ +G
Sbjct: 681 KGLFYVQLADPREVTTLSGEPPSMLVPRVWKNPRNFSFDDVLQAFLALFEALSLEG 736


>SB_41673| Best HMM Match : Glyco_hydro_38 (HMM E-Value=2.3e-24)
          Length = 687

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 23/93 (24%), Positives = 47/93 (50%), Gaps = 4/93 (4%)
 Frame = +2

Query: 317 GDEPKSEL-LPEGWNDTENYRIRYVLESKLYILHGLNTDG--NLIVNLMRSEDLAVTNIG 487
           GD   + L LP+G    +   +R VL + ++++    TDG     +++  + D+   N  
Sbjct: 489 GDRSGAYLFLPDG--PAKMQEVRVVLPNVVHVVRLYRTDGPEGHSLDIQNTVDVRSMNNK 546

Query: 488 VK-IDEILKESNGTIDVMMPNYKDFIFVIKRDL 583
           V+   ++  E    +DV+  NYK+F+  ++ D+
Sbjct: 547 VRRARDVSLEIQNKVDVLGINYKEFVMRLRTDI 579


>SB_27467| Best HMM Match : ANF_receptor (HMM E-Value=6.9e-19)
          Length = 922

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
 Frame = +2

Query: 143 TFIIVKMASDPLFGWDLTFKTIERDIKKQSDIIIAFIHWNLTRRGFRSIGLSDERTITGD 322
           TF I +++  P  G+     ++   IK  +D+ +  +  + T     SI   +E    G 
Sbjct: 335 TFCIAQVSYFPSTGYQTKIASLVTKIKTANDVNVIVLWGDPTT----SIAFLEEVRKQGV 390

Query: 323 EPKSELLPEGWND-TENYRIRYV 388
             K+ L PEGW++ T  ++ +Y+
Sbjct: 391 TGKTWLAPEGWSEATSLFKPKYM 413


>SB_58699| Best HMM Match : UCR_14kD (HMM E-Value=3.6e-37)
          Length = 116

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
 Frame = +2

Query: 245 AFIHWNLTRRGFRSIGLSDERTITGDEPKSEL---LPEGWNDTENYRIRYVLESKL 403
           AF  W +   G+R IGL  E  I  D   +E    +PE   +  N+RI   +++ +
Sbjct: 21  AFREWYIYACGYRQIGLKREDLIIEDSDVAEAVRRIPEEERNLRNFRIVRAIDTTM 76


>SB_19618| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 530

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 10/98 (10%)
 Frame = +2

Query: 341 LPEGWNDTENYRIRYVLESKLYILHGL------NTDGNLIVNLMRSEDLA----VTNIGV 490
           LP+ +N   N+ + Y  +S +Y+  G+      N  GN   N  +  D      V+N G 
Sbjct: 184 LPQ-YNGIFNWTMTYRTDSDIYVPGGVYYRVPTNMTGN--ENYAKGRDKLIYWPVSNCGN 240

Query: 491 KIDEILKESNGTIDVMMPNYKDFIFVIKRDLIDSITDK 604
             D I K+     D +M NYK  +    ++ +D IT+K
Sbjct: 241 SRDNIAKKLK--CDTLMRNYKFRLSFENKNCVDYITEK 276


>SB_26407| Best HMM Match : UQ_con (HMM E-Value=0)
          Length = 1282

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
 Frame = +2

Query: 320  DEPKSELLP-EGWNDTENYRIRYVLESKLYILHGLNT 427
            D+P+S  LP E WN T+N  +R +L S + +L+  NT
Sbjct: 1218 DDPQSGELPSERWNPTQN--VRTILLSVISLLNEPNT 1252


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,489,198
Number of Sequences: 59808
Number of extensions: 371483
Number of successful extensions: 681
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 681
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)