Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10a19r
         (764 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|c...   143   3e-35
SPAPB2B4.02 |grx5||monothiol glutaredoxin Grx5|Schizosaccharomyc...    93   3e-20
SPBC12D12.07c |trx2||mitochondrial thioredoxin Trx2|Schizosaccha...    62   1e-10
SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyc...    54   2e-08
SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces ...    45   1e-05
SPBC577.08c |txl1|trx3|thioredoxin-like I protein Txl1|Schizosac...    44   2e-05
SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces po...    41   2e-04
SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces po...    38   0.001
SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ...    28   1.7  
SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr...    28   1.7  
SPAC4A8.09c |cwf21||complexed with Cdc5 protein Cwf21 |Schizosac...    27   3.9  
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz...    25   9.0  
SPAC4F10.20 |grx1||glutaredoxin Grx1|Schizosaccharomyces pombe|c...    25   9.0  

>SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score =  143 bits (346), Expect = 3e-35
 Identities = 87/248 (35%), Positives = 133/248 (53%), Gaps = 31/248 (12%)
 Frame = -1

Query: 671 MSVSKLDSVEDFNNFIRSPALGVV--HFSAEWAEQCKQVTDVLEELLKLPEIQSSKTQCA 498
           MSV ++  VE F   +++    ++  +F A WA  CKQ+  V ++  K     +      
Sbjct: 1   MSV-EITFVEQFQEILQNGKEQIILLNFYAPWAAPCKQMNQVFDQFAK----DTKNAVFL 55

Query: 497 VCDAEALSEVSLQYKVDSVPTVILFKNGTQVDRIDGADA--------------------- 381
             +AE  S+++  + V++VP  +L      + RI GA+                      
Sbjct: 56  KIEAEKFSDIAESFDVNAVPLFVLIHGAKVLARISGANPQKLKAAIDEYIQPLISQISST 115

Query: 380 -AQISTKIKA-QSLN------KSPAEITPQKLEDRLKALINKHNIMVFMKGNKETPRCGF 225
            A + T++ + Q+ N      K+P  +  + L +RL  L N HN+M+F+KG    P CGF
Sbjct: 116 NASVETQVNSVQTTNTTSNTSKAPNGLDSE-LNERLSTLTNAHNVMLFLKGTPSEPACGF 174

Query: 224 SRTLIQILNGTGVQFGTFDILTDEEVRQGLKEYSDWPTYPQLYVKGELIGGLDIIKELQA 45
           SR L+ +L    VQ+G F+IL D+ VRQGLK +SDWPT+PQLY+KGE +GGLDI+ E+  
Sbjct: 175 SRKLVGLLREQNVQYGFFNILADDSVRQGLKVFSDWPTFPQLYIKGEFVGGLDIVSEMIE 234

Query: 44  NGELEATL 21
           NGEL+  L
Sbjct: 235 NGELQEML 242


>SPAPB2B4.02 |grx5||monothiol glutaredoxin Grx5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 146

 Score = 93.5 bits (222), Expect = 3e-20
 Identities = 42/96 (43%), Positives = 64/96 (66%), Gaps = 3/96 (3%)
 Frame = -1

Query: 299 LKALINKHNIMVFMKGNKETPRCGFSRTLIQILNGTGV---QFGTFDILTDEEVRQGLKE 129
           L+  + +  I++FMKG    P CGFS   IQIL+   V   +  T+++L+++E+R+G+KE
Sbjct: 29  LEQAVKEDPIVLFMKGTPTRPMCGFSLKAIQILSLENVASDKLVTYNVLSNDELREGIKE 88

Query: 128 YSDWPTYPQLYVKGELIGGLDIIKELQANGELEATL 21
           +SDWPT PQLY+ GE +GG DI+  +  +GEL   L
Sbjct: 89  FSDWPTIPQLYINGEFVGGSDILASMHKSGELHKIL 124


>SPBC12D12.07c |trx2||mitochondrial thioredoxin
           Trx2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 121

 Score = 61.7 bits (143), Expect = 1e-10
 Identities = 32/100 (32%), Positives = 58/100 (58%)
 Frame = -1

Query: 665 VSKLDSVEDFNNFIRSPALGVVHFSAEWAEQCKQVTDVLEELLKLPEIQSSKTQCAVCDA 486
           V+ ++S  D+N  I +  + VV F A+W   CK +   LE+L +    Q+ K      +A
Sbjct: 19  VNAVESFGDYNTRISADKVTVVDFYADWCGPCKYLKPFLEKLSE----QNQKASFIAVNA 74

Query: 485 EALSEVSLQYKVDSVPTVILFKNGTQVDRIDGADAAQIST 366
           +  S+++ +  V ++PT++LF+ G ++DRI GAD   +S+
Sbjct: 75  DKFSDIAQKNGVYALPTMVLFRKGQELDRIVGADVKTLSS 114


>SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 103

 Score = 54.4 bits (125), Expect = 2e-08
 Identities = 31/104 (29%), Positives = 52/104 (50%)
 Frame = -1

Query: 665 VSKLDSVEDFNNFIRSPALGVVHFSAEWAEQCKQVTDVLEELLKLPEIQSSKTQCAVCDA 486
           V ++    +F + +    L VV F A W   CK +    E+        S  T   V D 
Sbjct: 2   VKQVSDSSEFKSIVCQDKLVVVDFFATWCGPCKAIAPKFEQF---SNTYSDATFIKV-DV 57

Query: 485 EALSEVSLQYKVDSVPTVILFKNGTQVDRIDGADAAQISTKIKA 354
           + LSE++ +  V ++P+  L+KNG +++ I GA+ A++   IKA
Sbjct: 58  DQLSEIAAEAGVHAMPSFFLYKNGEKIEEIVGANPAKLEASIKA 101


>SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 359

 Score = 44.8 bits (101), Expect = 1e-05
 Identities = 35/116 (30%), Positives = 53/116 (45%), Gaps = 1/116 (0%)
 Frame = -1

Query: 665 VSKLDSVEDFNNFIRSPALG-VVHFSAEWAEQCKQVTDVLEELLKLPEIQSSKTQCAVCD 489
           V +L S+ +  N IR+   G ++ F A W   CK +  V EEL  L E   +       D
Sbjct: 22  VVELQSLNELENTIRASKKGALIEFYATWCGHCKSLAPVYEELGALFE-DHNDVLIGKID 80

Query: 488 AEALSEVSLQYKVDSVPTVILFKNGTQVDRIDGADAAQISTKIKAQSLNKSPAEIT 321
           A+  S+V+ +Y +   PT+I F         DG++  Q S      SL +  +E T
Sbjct: 81  ADTHSDVADKYHITGFPTLIWFPP-------DGSEPVQYSNARDVDSLTQFVSEKT 129



 Score = 31.9 bits (69), Expect = 0.10
 Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
 Frame = -1

Query: 668 SVSKLDSVEDFNNFIRSPALGV-VHFSAEWAEQCKQVTDVLEELLKLPEIQSSKTQCAVC 492
           +V +LDS+ +F+  +      V V F A+W   CK++    E L K+ +      +    
Sbjct: 141 NVVELDSL-NFDKVVMDDKKDVLVEFYADWCGYCKRLAPTYETLGKVFK-NEPNVEIVKI 198

Query: 491 DAEALSEVSLQYKVDSVPTVILF 423
           +A+  +++   ++V S PT+  F
Sbjct: 199 NADVFADIGRLHEVASFPTIKFF 221


>SPBC577.08c |txl1|trx3|thioredoxin-like I protein
           Txl1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 290

 Score = 44.0 bits (99), Expect = 2e-05
 Identities = 25/104 (24%), Positives = 50/104 (48%)
 Frame = -1

Query: 671 MSVSKLDSVEDFNNFIRSPALGVVHFSAEWAEQCKQVTDVLEELLKLPEIQSSKTQCAVC 492
           MSV ++ S + + + I       V   A+W   CK ++ +  +L    +  S K   A  
Sbjct: 1   MSVIEIRSYQHWISTIPKSGYLAVDCYADWCGPCKAISPLFSQLAS--KYASPKFVFAKV 58

Query: 491 DAEALSEVSLQYKVDSVPTVILFKNGTQVDRIDGADAAQISTKI 360
           + +   +++    V ++PT + F+NG Q+D + GA+   +  K+
Sbjct: 59  NVDEQRQIASGLGVKAMPTFVFFENGKQIDMLTGANPQALKEKV 102


>SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 492

 Score = 40.7 bits (91), Expect = 2e-04
 Identities = 26/114 (22%), Positives = 44/114 (38%)
 Frame = -1

Query: 644 EDFNNFIRSPALGVVHFSAEWAEQCKQVTDVLEELLKLPEIQSSKTQCAVCDAEALSEVS 465
           E  N  I +  + +V F A W   CK +    E      E++         D     ++ 
Sbjct: 30  EGLNELITADKVLMVKFYAPWCGHCKALAPEYESAAD--ELEKDGISLVEVDCTEEGDLC 87

Query: 464 LQYKVDSVPTVILFKNGTQVDRIDGADAAQISTKIKAQSLNKSPAEITPQKLED 303
            +Y +   PT+ +FKNG Q+ +  G        K   + L  +   I+   LE+
Sbjct: 88  SEYSIRGYPTLNVFKNGKQISQYSGPRKHDALVKYMRKQLLPTVKPISKDTLEN 141



 Score = 32.7 bits (71), Expect = 0.059
 Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
 Frame = -1

Query: 644 EDFNNFIRSPALGV-VHFSAEWAEQCKQVTDVLEELLKLPEIQSSKTQCAVCDAEALSEV 468
           ++F++ +      V V F A W   CK +    E   KL E  S  +   V   +A +E 
Sbjct: 363 DNFDDIVMDETKDVLVEFYAPWCGHCKNLAPTYE---KLAEEYSDDSNVVVAKIDA-TEN 418

Query: 467 SLQYKVDSVPTVILFKNGTQVDRI 396
            +   +   PT++ FK   +V+ +
Sbjct: 419 DISVSISGFPTIMFFKANDKVNPV 442


>SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 363

 Score = 38.3 bits (85), Expect = 0.001
 Identities = 28/114 (24%), Positives = 51/114 (44%), Gaps = 1/114 (0%)
 Frame = -1

Query: 644 EDFNNFIRSPALGVVHFSAEWAEQCKQVTDVLEELLKLPEIQSSKTQCAV-CDAEALSEV 468
           ++F  F+++    +V F A W   CK++    ++L     + S     AV CDA+    V
Sbjct: 39  KNFRKFVKAKGPSLVVFYAPWCGYCKKLVPTYQKLAS--NLHSLLPVTAVDCDADQNRAV 96

Query: 467 SLQYKVDSVPTVILFKNGTQVDRIDGADAAQISTKIKAQSLNKSPAEITPQKLE 306
             QY+V   PT+ L    ++   +   D    +     +SL K  ++  P K++
Sbjct: 97  CSQYQVQGFPTIKLVYPSSKGSSLSSTD---YNGDRSYKSLQKFVSDSIPSKVK 147


>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 726

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 15/69 (21%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
 Frame = -1

Query: 572 CKQVTDVLEELLKLPEIQSSKTQCAVCDAEALSEVSLQYKVDSVPTVILFKNGTQVDRID 393
           CK++  + + +++  + Q   +     + +   E+S    + +VPT+ L++NG  V+ + 
Sbjct: 57  CKRLGPMWDNMVEKAKEQVEGSNFHFGEVDCSKELSSCANIRAVPTLYLYQNGEIVEEVP 116

Query: 392 -GADAAQIS 369
            GA  ++ S
Sbjct: 117 FGASTSEAS 125


>SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 904

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 30/113 (26%), Positives = 49/113 (43%), Gaps = 4/113 (3%)
 Frame = -1

Query: 461 QYKVDSVPTVILFKN-GTQVDRIDGADAAQISTKIKAQSLNKSP--AEITP-QKLEDRLK 294
           Q + DS  TV   K  G +V  + G   A      +   ++ S   AE  P QK E   K
Sbjct: 670 QVRPDSYQTVSALKQLGKKVCLLTGDQKATARRVAQGLEIDFSDVYAEAVPSQKAEIIQK 729

Query: 293 ALINKHNIMVFMKGNKETPRCGFSRTLIQILNGTGVQFGTFDILTDEEVRQGL 135
               KH + +   G  ++P    +   I  +NG+G+   + D++    VR+G+
Sbjct: 730 LKDQKHCVAMVGDGINDSPSLVLADVGIAPINGSGIALESADVIL---VRKGV 779


>SPAC4A8.09c |cwf21||complexed with Cdc5 protein Cwf21
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 293

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 17/63 (26%), Positives = 31/63 (49%)
 Frame = -1

Query: 485 EALSEVSLQYKVDSVPTVILFKNGTQVDRIDGADAAQISTKIKAQSLNKSPAEITPQKLE 306
           + L EVS Q+  D+  +      GT+  +   A      ++ K +SL+++  EI  QK  
Sbjct: 73  QLLEEVSSQHSTDAAASDSNTNFGTENPKPPKAIIKDEQSQSKTKSLDEADVEILVQKYR 132

Query: 305 DRL 297
           ++L
Sbjct: 133 EQL 135


>SPBC56F2.07c |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -1

Query: 170 DILTDEEVRQGLKEYSDWP 114
           DI   EEV+Q LKE  +WP
Sbjct: 549 DIGGQEEVKQKLKESVEWP 567


>SPAC4F10.20 |grx1||glutaredoxin Grx1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 101

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 20/99 (20%), Positives = 46/99 (46%), Gaps = 1/99 (1%)
 Frame = -1

Query: 311 LEDRLKALINKHNIMVFMKGNKETPRCGFSRTLIQILNGTGVQFGTFDILTD-EEVRQGL 135
           +E  + + +  ++++VF K     P C  +  +I        Q    D++ + +E++  L
Sbjct: 4   VESFVDSAVADNDVVVFAKSY--CPYCHATEKVIADKK-IKAQVYQIDLMNNGDEIQSYL 60

Query: 134 KEYSDWPTYPQLYVKGELIGGLDIIKELQANGELEATLN 18
            + +   T P +++  + +GG    + L   GEL++  N
Sbjct: 61  LKKTGQRTVPNIFIHQKHVGGNSDFQALFKKGELDSLFN 99


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,026,316
Number of Sequences: 5004
Number of extensions: 62036
Number of successful extensions: 203
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)