Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10a18r
(517 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_47363| Best HMM Match : No HMM Matches (HMM E-Value=.) 171 3e-43
SB_2591| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 2e-04
SB_50457| Best HMM Match : Amidase (HMM E-Value=2.6e-36) 35 0.046
SB_228| Best HMM Match : SAM_1 (HMM E-Value=10) 33 0.14
SB_35353| Best HMM Match : Arm (HMM E-Value=6.6e-27) 32 0.32
SB_56934| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.74
SB_10198| Best HMM Match : MBT (HMM E-Value=0) 29 3.0
SB_3614| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.0
SB_45788| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.9
SB_9053| Best HMM Match : TIG (HMM E-Value=0) 27 9.2
>SB_47363| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 107
Score = 171 bits (416), Expect = 3e-43
Identities = 79/97 (81%), Positives = 90/97 (92%)
Frame = -1
Query: 337 KLQEPILLLGKEKFSMVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIK 158
K++EPILLLGKE+F VDIRV VKGGGH +++YAIRQAISK+L+A+YQKYVDE SKKEI+
Sbjct: 11 KVEEPILLLGKERFEGVDIRVRVKGGGHTSRIYAIRQAISKSLVAYYQKYVDEVSKKEIR 70
Query: 157 DILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 47
DILVQYDRSLLVADPRR E KKFGGPGAR+RYQKSYR
Sbjct: 71 DILVQYDRSLLVADPRRTEAKKFGGPGARSRYQKSYR 107
>SB_2591| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 533
Score = 42.3 bits (95), Expect = 2e-04
Identities = 34/99 (34%), Positives = 48/99 (48%)
Frame = -1
Query: 445 GRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTVK 266
G +K + A A+ +G G + VN RP RL Q K Q + D V
Sbjct: 338 GYRKRSVAKAWVMKGSGKITVNDRPFVEYFSRL-QDKQQILFPFQVVDCVGQFDASCHVL 396
Query: 265 GGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDIL 149
GGG Q AIR AIS+AL+ F + ++ E ++EI + L
Sbjct: 397 GGGLTGQAGAIRLAISRALLNFSEDHL-EPLQEEIPESL 434
>SB_50457| Best HMM Match : Amidase (HMM E-Value=2.6e-36)
Length = 391
Score = 34.7 bits (76), Expect = 0.046
Identities = 29/80 (36%), Positives = 37/80 (46%)
Frame = -1
Query: 286 DIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRR 107
DI+V V GGG Q AI+ I++ALI F ++K L + + D R
Sbjct: 323 DIKVNVHGGGESGQAGAIKHGITRALIDF---------NADLKPTLSK--AGFVTRDARE 371
Query: 106 CEPKKFGGPGARARYQKSYR 47
E KK G AR R Q S R
Sbjct: 372 VERKKCGLRKARRRKQFSKR 391
>SB_228| Best HMM Match : SAM_1 (HMM E-Value=10)
Length = 119
Score = 33.1 bits (72), Expect = 0.14
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = -1
Query: 211 LIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCE 101
++AF QKY+D +KE +Q+ + +LV+ R CE
Sbjct: 53 VLAFRQKYLDNFGRKETSKRFLQFAQGVLVSLARECE 89
>SB_35353| Best HMM Match : Arm (HMM E-Value=6.6e-27)
Length = 513
Score = 31.9 bits (69), Expect = 0.32
Identities = 16/27 (59%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Frame = -3
Query: 260 WSCSTSLRYQTSYFK-GSDRLLPEICR 183
WSCSTS+R +TS FK GS LL + R
Sbjct: 155 WSCSTSMRNRTSIFKAGSVPLLARLIR 181
>SB_56934| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2541
Score = 30.7 bits (66), Expect = 0.74
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Frame = -1
Query: 268 KGGGHVAQ--VYAIRQAISKALIAFYQKYV-DEASKKEIKDILVQYDRSLLVADPRRCEP 98
K GGH++Q + I Q K L A + K + DE K++ K+I V+ +RS + ++ EP
Sbjct: 91 KLGGHLSQPKLKKITQVNKKKLRATHHKAILDEIMKEKAKEIDVKKERSTISRRGKKREP 150
Query: 97 K 95
+
Sbjct: 151 E 151
>SB_10198| Best HMM Match : MBT (HMM E-Value=0)
Length = 753
Score = 28.7 bits (61), Expect = 3.0
Identities = 12/18 (66%), Positives = 15/18 (83%)
Frame = -2
Query: 516 LFSLSKWLLCRRQDVSPS 463
+FSLSK LC+R D+SPS
Sbjct: 611 VFSLSKVALCKRCDISPS 628
>SB_3614| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 117
Score = 28.3 bits (60), Expect = 4.0
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Frame = +2
Query: 293 REFFLAEQKDRFLKFVLQQSGLNQ--VQWAP 379
R F + KDR+LK L++ G Q QW P
Sbjct: 12 RSFLFTQDKDRYLKAGLKKYGYGQWTAQWVP 42
>SB_45788| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 165
Score = 27.5 bits (58), Expect = 6.9
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = -3
Query: 401 SWNAACKRAPIGLG*AQTAAVQTSGTYPFARQGKILYG 288
SW A K+ P G G ++ +G Y R G+ YG
Sbjct: 19 SWQNAEKKKPAGFGRGRSKRGYVNGNYEARRPGERSYG 56
>SB_9053| Best HMM Match : TIG (HMM E-Value=0)
Length = 2990
Score = 27.1 bits (57), Expect = 9.2
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = -1
Query: 319 LLLGKEKFSMVDIRVTVKGGGHVAQVYAIRQAISKALIAF 200
L +GKEK +M GGH+ + + + Q K F
Sbjct: 463 LWIGKEKNTMTPSSAPAMPGGHLVRSFKVEQVADKVFKTF 502
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,007,542
Number of Sequences: 59808
Number of extensions: 376994
Number of successful extensions: 1079
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1012
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1079
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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