Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10a18r
(517 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g09990.1 68415.m01037 40S ribosomal protein S16 (RPS16A) Same... 220 5e-58
At5g18380.1 68418.m02162 40S ribosomal protein S16 (RPS16C) 219 7e-58
At3g04230.1 68416.m00447 40S ribosomal protein S16 (RPS16B) simi... 219 7e-58
At3g49080.1 68416.m05362 ribosomal protein S9 family protein con... 45 3e-05
At1g43570.1 68414.m05001 hypothetical protein 31 0.35
At1g50650.1 68414.m05694 stigma-specific Stig1 family protein lo... 29 2.5
At5g40090.1 68418.m04863 disease resistance protein-related cont... 27 5.7
At3g24255.1 68416.m03045 expressed protein 27 5.7
At5g43120.1 68418.m05264 tetratricopeptide repeat (TPR)-containi... 27 7.5
At5g20410.1 68418.m02427 1,2-diacylglycerol 3-beta-galactosyltra... 27 7.5
At4g11090.1 68417.m01801 expressed protein other hypothetical pr... 27 9.9
At4g01470.1 68417.m00190 major intrinsic family protein / MIP fa... 27 9.9
>At2g09990.1 68415.m01037 40S ribosomal protein S16 (RPS16A) Same as
GB:Q42340
Length = 146
Score = 220 bits (537), Expect = 5e-58
Identities = 98/145 (67%), Positives = 126/145 (86%)
Frame = -1
Query: 481 ARREPIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKE 302
A + ++VQ FGRKKTA AV +CKRG G++++NG P++L +P +L++K+ EPILLLGK
Sbjct: 2 ATQPATESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPILLLGKH 61
Query: 301 KFSMVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLV 122
+F+ V++R+ V GGGH +QVYAIRQ+I+KAL+A+YQKYVDE SKKEIKDILV+YDR+LLV
Sbjct: 62 RFAGVNMRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLV 121
Query: 121 ADPRRCEPKKFGGPGARARYQKSYR 47
ADPRRCEPKKFGG GAR+RYQKSYR
Sbjct: 122 ADPRRCEPKKFGGRGARSRYQKSYR 146
>At5g18380.1 68418.m02162 40S ribosomal protein S16 (RPS16C)
Length = 146
Score = 219 bits (536), Expect = 7e-58
Identities = 97/145 (66%), Positives = 126/145 (86%)
Frame = -1
Query: 481 ARREPIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKE 302
A + ++VQ FGRKKTA AV +CKRG G++++NG P++L +P +L++K+ EP+LLLGK
Sbjct: 2 ATQPATESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPVLLLGKH 61
Query: 301 KFSMVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLV 122
+F+ V++R+ V GGGH +QVYAIRQ+I+KAL+A+YQKYVDE SKKEIKDILV+YDR+LLV
Sbjct: 62 RFAGVNMRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLV 121
Query: 121 ADPRRCEPKKFGGPGARARYQKSYR 47
ADPRRCEPKKFGG GAR+RYQKSYR
Sbjct: 122 ADPRRCEPKKFGGRGARSRYQKSYR 146
>At3g04230.1 68416.m00447 40S ribosomal protein S16 (RPS16B) similar
to 40S ribosomal protein S16 GB:AAD22696 [Arabidopsis
thaliana]
Length = 146
Score = 219 bits (536), Expect = 7e-58
Identities = 96/139 (69%), Positives = 124/139 (89%)
Frame = -1
Query: 463 QAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVD 284
++VQ FGRKKTATAV YCKRG GM+++NG P++L +P +L++K+ EP+LLLGK +F+ VD
Sbjct: 8 ESVQCFGRKKTATAVTYCKRGSGMIKLNGSPIELYQPEILRFKIFEPVLLLGKHRFAGVD 67
Query: 283 IRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRC 104
+R+ GGG+ ++VYAIRQ+I+KAL+A+YQKYVDE SKKEIKDIL++YDR+LLVADPRRC
Sbjct: 68 MRIRATGGGNTSRVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILMRYDRTLLVADPRRC 127
Query: 103 EPKKFGGPGARARYQKSYR 47
E KKFGGPGARAR+QKSYR
Sbjct: 128 ESKKFGGPGARARFQKSYR 146
>At3g49080.1 68416.m05362 ribosomal protein S9 family protein
contains Pfam profile PF00380: ribosomal protein S9
Length = 430
Score = 45.2 bits (102), Expect = 3e-05
Identities = 28/79 (35%), Positives = 42/79 (53%)
Frame = -1
Query: 445 GRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTVK 266
GR+K + A + + G G +VN + D+ P +L ++ L + DI+ TVK
Sbjct: 310 GRRKCSIARVWIQPGEGKFQVNEKEFDVYFP-MLDHRAALLRPLAETKTLGRWDIKCTVK 368
Query: 265 GGGHVAQVYAIRQAISKAL 209
GGG QV AI+ IS+AL
Sbjct: 369 GGGTTGQVGAIQLGISRAL 387
>At1g43570.1 68414.m05001 hypothetical protein
Length = 348
Score = 31.5 bits (68), Expect = 0.35
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = +3
Query: 105 QRRGSATSKLLSYCTRMSLISFFEASSTYFW*KAIR 212
+R S T + LSYC R+ LI S T FW A R
Sbjct: 19 KRISSWTGRFLSYCGRLQLIKSVLMSITNFWSSAFR 54
>At1g50650.1 68414.m05694 stigma-specific Stig1 family protein low
similarity to stigma-specific protein STIG1 [Nicotiana
tabacum] GI:496647; contains Pfam profile PF04885:
Stigma-specific protein, Stig1
Length = 174
Score = 28.7 bits (61), Expect = 2.5
Identities = 11/39 (28%), Positives = 17/39 (43%)
Frame = +1
Query: 385 HAAFHDHACNTQLRWRFSYVRILGRPGWAHVLPPAQQPF 501
H HD+ NT W S+++ W PP +P+
Sbjct: 22 HVLGHDNQLNTTSSWLKSHIKAATTTNWGRPKPPMCKPW 60
>At5g40090.1 68418.m04863 disease resistance protein-related
contains Pfam domain, PF00931: NB-ARC domain, a novel
signalling motif found in plant resistance gene products
Length = 385
Score = 27.5 bits (58), Expect = 5.7
Identities = 11/49 (22%), Positives = 26/49 (53%)
Frame = -1
Query: 310 GKEKFSMVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKE 164
G+E++ +++ K GGH+ +V+ + +A + ++ D +KE
Sbjct: 310 GREEWVAALLKLKAKQGGHIMEVWKLMEATDDKGLEEWETAADIVERKE 358
>At3g24255.1 68416.m03045 expressed protein
Length = 836
Score = 27.5 bits (58), Expect = 5.7
Identities = 17/42 (40%), Positives = 22/42 (52%)
Frame = +3
Query: 108 RRGSATSKLLSYCTRMSLISFFEASSTYFW*KAIRAFEIACL 233
R G T++ LS+ R+ LIS S T FW A R AC+
Sbjct: 142 RIGKWTARHLSFAGRLQLISSVIHSLTNFWMSAFR-LPSACI 182
>At5g43120.1 68418.m05264 tetratricopeptide repeat (TPR)-containing
protein contains Pfam profile PF00515: TPR Domain
Length = 588
Score = 27.1 bits (57), Expect = 7.5
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -1
Query: 325 PILLLGKEKFSMVDIRVTVKGGGHVAQVYAIRQAIS 218
P+L L + K S V+ RV V+ GH+A +A++
Sbjct: 139 PLLELMRRKMSWVEQRVVVRALGHLASYETTFEAVA 174
>At5g20410.1 68418.m02427 1,2-diacylglycerol
3-beta-galactosyltransferase, putative /
monogalactosyldiacylglycerol synthase, putative / MGDG
synthase, putative identical to
monogalactosyldiacylglycerol synthase [gi:3367638] from
Arabidopsis thaliana, similar to MGDG synthase type A
[gi:9884651] from Glycine max
Length = 468
Score = 27.1 bits (57), Expect = 7.5
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = -1
Query: 322 ILLLGKEKFSMVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKY 188
++ +G E+ V I ++ GGGH A AIR A I F KY
Sbjct: 60 LIQIGAERTKNVLILMSDTGGGHRASAEAIRDAFK---IEFGDKY 101
>At4g11090.1 68417.m01801 expressed protein other hypothetical
proteins - Arabidopsis thaliana
Length = 432
Score = 26.6 bits (56), Expect = 9.9
Identities = 9/28 (32%), Positives = 12/28 (42%)
Frame = -2
Query: 372 HWTWLSPDCCSTNFRNLSFCSARKNSLW 289
+W W DC F +L F +N W
Sbjct: 122 NWKWKPNDCSLPRFDSLRFLQLMRNKSW 149
>At4g01470.1 68417.m00190 major intrinsic family protein / MIP
family protein contains Pfam profile: MIP PF00230
Length = 252
Score = 26.6 bits (56), Expect = 9.9
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = +3
Query: 402 PRLQYATAVAVFLRPNTWTAWMGSRLASCTAAIL 503
P + + AV ++ N W W+G + + AAI+
Sbjct: 200 PAVSFGPAVVSWIWTNHWVYWVGPFIGAAIAAIV 233
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,424,445
Number of Sequences: 28952
Number of extensions: 256192
Number of successful extensions: 743
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 742
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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