Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10a17r
         (497 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6482| Best HMM Match : No HMM Matches (HMM E-Value=.)              238   2e-63
SB_49538| Best HMM Match : No HMM Matches (HMM E-Value=.)              66   2e-11
SB_28852| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.23 
SB_44890| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.92 
SB_31467| Best HMM Match : CTP_transf_2 (HMM E-Value=0.85)             29   2.1  
SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.7  
SB_59196| Best HMM Match : DUF593 (HMM E-Value=1.7)                    28   4.9  
SB_48733| Best HMM Match : RVT_1 (HMM E-Value=5.2e-05)                 28   4.9  
SB_6924| Best HMM Match : TTL (HMM E-Value=4.4e-09)                    28   4.9  
SB_37962| Best HMM Match : Tcp10_C (HMM E-Value=5.9e-36)               27   6.5  
SB_3781| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.5  

>SB_6482| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 153

 Score =  238 bits (583), Expect = 2e-63
 Identities = 105/131 (80%), Positives = 124/131 (94%)
 Frame = -2

Query: 442 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 263
           MSLVIP+KFQHILR++NTNIDGK+K+MFAMT+IKGVGRRY+NIV KKADID++KRAGE T
Sbjct: 1   MSLVIPEKFQHILRVLNTNIDGKQKIMFAMTSIKGVGRRYANIVCKKADIDMNKRAGELT 60

Query: 262 EEEVEKIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAH 83
           E+EVE+++TIM NPRQYKIPDWFLNRQKD  DGKYSQ+ ++ LD+K+REDLERLKKIRAH
Sbjct: 61  EDEVERVVTIMQNPRQYKIPDWFLNRQKDHKDGKYSQILANGLDNKMREDLERLKKIRAH 120

Query: 82  RGMRHYWGLRV 50
           RG+RHYWGLRV
Sbjct: 121 RGLRHYWGLRV 131


>SB_49538| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 34

 Score = 66.1 bits (154), Expect = 2e-11
 Identities = 28/34 (82%), Positives = 34/34 (100%)
 Frame = -2

Query: 442 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIK 341
           MSLVIP+KFQHILR++NTNIDGK+K+MFAMT+IK
Sbjct: 1   MSLVIPEKFQHILRVLNTNIDGKQKIMFAMTSIK 34


>SB_28852| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3172

 Score = 32.3 bits (70), Expect = 0.23
 Identities = 21/64 (32%), Positives = 33/64 (51%)
 Frame = -2

Query: 274 GECTEEEVEKIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKK 95
           GEC  ++V     +  +PR  K PD  LN  KD  +GK    T+  + ++L  D ++ K 
Sbjct: 645 GECVTQKV----CVHLDPRS-KHPDPSLNVNKDSEEGKTQAQTTDEIIAQLISDHKKKKN 699

Query: 94  IRAH 83
            R+H
Sbjct: 700 ARSH 703


>SB_44890| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1109

 Score = 30.3 bits (65), Expect = 0.92
 Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
 Frame = -2

Query: 310 LKKADIDLDKRAGECTEEEVEKII-TIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSS-N 137
           LK+  ++L  +A   TE+E+   + ++M+N R  K+    L  + D +  K   LTSS  
Sbjct: 726 LKRVKVEL--QASRQTEQELRSTMHSLMANERSAKVELSQLKAENDSLQHKIQSLTSSRQ 783

Query: 136 LDSKLREDLERLKKIRAHRGMR 71
            D      LER  K+++ R  R
Sbjct: 784 QDRSAISSLER--KLKSERDAR 803


>SB_31467| Best HMM Match : CTP_transf_2 (HMM E-Value=0.85)
          Length = 1459

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = +2

Query: 71   SHPSVSANLLEPLQIFTEF*IQVGGGQLAVFTIN-NILLPI*EPVWYLILPRIRHDSDNF 247
            +HPSVS +L + +   T   + V  GQ   +  + ++ + + + VWY   P +  D  +F
Sbjct: 874  THPSVSVSLGQSIWYHTHLSVSVSLGQSIWYNTHLSVSVSLCQSVWYHTHPSVLQDVLDF 933

Query: 248  F 250
            +
Sbjct: 934  Y 934


>SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6863

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
 Frame = -2

Query: 211  KIPDWFLNRQKDIVDGKYSQLTSSNLD-SKLREDLERLKKIRAHRGMR 71
            K+  W L+     V+ KY +  S + + + LRE+LE +KK+R   G++
Sbjct: 2757 KLHQWLLD-----VENKYKEKASDSANVAVLREELEDIKKLRQDMGIQ 2799


>SB_59196| Best HMM Match : DUF593 (HMM E-Value=1.7)
          Length = 1376

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = -2

Query: 250  EKIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSN--LDSKLREDLER 104
            ++I T M    + K+    + ++K+ ++GKY QL S    L+S   +D  R
Sbjct: 1207 DQICTHMHEVEELKLKIARIEKEKEYLEGKYDQLNSDKPVLESSRVDDFSR 1257


>SB_48733| Best HMM Match : RVT_1 (HMM E-Value=5.2e-05)
          Length = 1104

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 10/37 (27%), Positives = 23/37 (62%)
 Frame = +3

Query: 252 TSSSVHSPARLSRSMSAFLRTMLEYLRPTPLIAVIAN 362
           T +++HS  + ++++  F+ + +E  RPT L  ++ N
Sbjct: 826 TDTALHSKGKDNKTLDLFVSSRVEKYRPTKLHEIVGN 862


>SB_6924| Best HMM Match : TTL (HMM E-Value=4.4e-09)
          Length = 458

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 17/61 (27%), Positives = 30/61 (49%)
 Frame = -2

Query: 421 KFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKI 242
           +F+H ++     +  KRK +     +       +NI   K DIDL    G CTE+E+ ++
Sbjct: 59  EFRHEVQASTRKVSSKRKPIRKRRTVT------ANISATKYDIDL---LGYCTEQEIRRV 109

Query: 241 I 239
           +
Sbjct: 110 V 110


>SB_37962| Best HMM Match : Tcp10_C (HMM E-Value=5.9e-36)
          Length = 1290

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -2

Query: 193 LNRQKDIVDGKYSQLTSSNLDSKLREDLERLK 98
           L R+K + + KY +   +N D K RE++E LK
Sbjct: 873 LRREKKVFE-KYQKAARANPDKKEREEIESLK 903


>SB_3781| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 499

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 13/23 (56%), Positives = 18/23 (78%), Gaps = 2/23 (8%)
 Frame = -2

Query: 154 QLTSS--NLDSKLREDLERLKKI 92
           QLTS   N+D K+RE LE++KK+
Sbjct: 72  QLTSEEDNVDPKIREGLEKIKKL 94


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,797,834
Number of Sequences: 59808
Number of extensions: 325724
Number of successful extensions: 970
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 969
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)