Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10a17r
         (497 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g09800.1 68417.m01609 40S ribosomal protein S18 (RPS18C)           211   2e-55
At1g34030.1 68414.m04219 40S ribosomal protein S18 (RPS18B) simi...   211   2e-55
At1g22780.1 68414.m02846 40S ribosomal protein S18 (RPS18A) Matc...   211   2e-55
At1g61710.1 68414.m06960 DC1 domain-containing protein contains ...    29   1.7  
At4g10960.1 68417.m01781 UDP-glucose 4-epimerase, putative / UDP...    28   3.0  
At5g14320.1 68418.m01674 30S ribosomal protein S13, chloroplast ...    27   7.0  

>At4g09800.1 68417.m01609 40S ribosomal protein S18 (RPS18C)
          Length = 152

 Score =  211 bits (516), Expect = 2e-55
 Identities = 91/131 (69%), Positives = 117/131 (89%)
 Frame = -2

Query: 442 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 263
           MSLV  ++FQHILR++NTN+DGK+K+MFA+T+IKG+GRR +NIV KKAD+D++KRAGE +
Sbjct: 1   MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELS 60

Query: 262 EEEVEKIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAH 83
             E++ ++TI++NPRQ+KIPDWFLNRQKD  DGKYSQ+ S+ LD KLR+DLERLKKIR H
Sbjct: 61  AAEIDNLMTIVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120

Query: 82  RGMRHYWGLRV 50
           RG+RHYWGLRV
Sbjct: 121 RGLRHYWGLRV 131


>At1g34030.1 68414.m04219 40S ribosomal protein S18 (RPS18B) similar
           to ribosomal protein S18 GI:38422 from [Homo sapiens]
          Length = 152

 Score =  211 bits (516), Expect = 2e-55
 Identities = 91/131 (69%), Positives = 117/131 (89%)
 Frame = -2

Query: 442 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 263
           MSLV  ++FQHILR++NTN+DGK+K+MFA+T+IKG+GRR +NIV KKAD+D++KRAGE +
Sbjct: 1   MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELS 60

Query: 262 EEEVEKIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAH 83
             E++ ++TI++NPRQ+KIPDWFLNRQKD  DGKYSQ+ S+ LD KLR+DLERLKKIR H
Sbjct: 61  AAEIDNLMTIVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120

Query: 82  RGMRHYWGLRV 50
           RG+RHYWGLRV
Sbjct: 121 RGLRHYWGLRV 131


>At1g22780.1 68414.m02846 40S ribosomal protein S18 (RPS18A) Match
           to ribosomal S18 gene mRNA gb|Z28701, DNA gb|Z23165 from
           A. thaliana. ESTs gb|T21121, gb|Z17755, gb|R64776 and
           gb|R30430 come from this gene
          Length = 152

 Score =  211 bits (516), Expect = 2e-55
 Identities = 91/131 (69%), Positives = 117/131 (89%)
 Frame = -2

Query: 442 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 263
           MSLV  ++FQHILR++NTN+DGK+K+MFA+T+IKG+GRR +NIV KKAD+D++KRAGE +
Sbjct: 1   MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELS 60

Query: 262 EEEVEKIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAH 83
             E++ ++TI++NPRQ+KIPDWFLNRQKD  DGKYSQ+ S+ LD KLR+DLERLKKIR H
Sbjct: 61  AAEIDNLMTIVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120

Query: 82  RGMRHYWGLRV 50
           RG+RHYWGLRV
Sbjct: 121 RGLRHYWGLRV 131


>At1g61710.1 68414.m06960 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 402

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = +2

Query: 245 FFNLFFCAFASTLVKINVGFFENNVGVPPANT 340
           FFNLFF A     +KI +G F  ++ +PP+++
Sbjct: 34  FFNLFFYAQVHENLKIELGIFSRSI-LPPSSS 64


>At4g10960.1 68417.m01781 UDP-glucose 4-epimerase, putative /
           UDP-galactose 4-epimerase, putative / Galactowaldenase,
           putative similar to UDP-galactose 4-epimerase from
           Arabidopsis thaliana SP|Q42605, Cyamopsis tetragonoloba
           GI:3021357 [AJ005082]
          Length = 351

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -2

Query: 166 GKYSQLTSSNLDSKLREDLERLKKIRAHRGMR 71
           G YS +   NLD+     L+R+KK+ A  G R
Sbjct: 26  GGYSVVVVDNLDNSSAVSLQRVKKLAAEHGER 57


>At5g14320.1 68418.m01674 30S ribosomal protein S13, chloroplast
           (CS13) ribosomal protein S13 precursor, chloroplast
           Arabidopsis thaliana, PIR:S59594; identical to cDNA
           ribosomal protein S13 GI:1515106
          Length = 169

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 10/19 (52%), Positives = 16/19 (84%)
 Frame = -2

Query: 112 LERLKKIRAHRGMRHYWGL 56
           ++RLK+I+ +RG+RH  GL
Sbjct: 122 IKRLKEIQCYRGVRHIQGL 140


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,061,442
Number of Sequences: 28952
Number of extensions: 226928
Number of successful extensions: 644
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 644
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)