Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10a16r
(768 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_32622| Best HMM Match : Ank (HMM E-Value=2.2e-05) 32 0.59
SB_20346| Best HMM Match : Herpes_UL3 (HMM E-Value=2.7) 32 0.59
SB_53470| Best HMM Match : E-MAP-115 (HMM E-Value=7.6) 29 3.1
SB_27251| Best HMM Match : Extensin_2 (HMM E-Value=0.077) 29 4.1
SB_40683| Best HMM Match : VWD (HMM E-Value=2.4e-05) 29 4.1
SB_45773| Best HMM Match : TFIIB (HMM E-Value=0.0018) 29 5.5
SB_45143| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.5
SB_4869| Best HMM Match : Coprinus_mating (HMM E-Value=2.8) 29 5.5
SB_14655| Best HMM Match : Ketoacyl-synt_C (HMM E-Value=0) 28 7.2
SB_48142| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_16746| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_25956| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_31213| Best HMM Match : SNF2_N (HMM E-Value=0) 28 9.5
SB_805| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
>SB_32622| Best HMM Match : Ank (HMM E-Value=2.2e-05)
Length = 509
Score = 31.9 bits (69), Expect = 0.59
Identities = 19/78 (24%), Positives = 31/78 (39%), Gaps = 1/78 (1%)
Frame = +3
Query: 531 HGATDDGVLSVDQFVHKAVQLEHVEAFVVDAHEPAHAVVLG-TQEDADHSIDSFVGHDIN 707
HG + + + S Q H V +H V D H+ H V T+ HS ++ +
Sbjct: 339 HGHSTNTITSRSQHQHDHVTAQHQHDHVTDQHQHDHVTVTAPTRSRHGHSTNTITSRSQH 398
Query: 708 RHLERMVIEAAHAGHKGH 761
+H + + A GH
Sbjct: 399 QH-NHVTVTAPTRSRHGH 415
>SB_20346| Best HMM Match : Herpes_UL3 (HMM E-Value=2.7)
Length = 461
Score = 31.9 bits (69), Expect = 0.59
Identities = 14/53 (26%), Positives = 26/53 (49%)
Frame = +3
Query: 69 VRVQVGEIVLHHDHLRGVHGLAGVRHAEVFSVDHYVSELHVVSEEARHVNRSV 227
+ +G ++ DH+ G+H + + VDH + +H + +E HV R V
Sbjct: 140 IETDMGHVIREVDHVIGIHKIEKEVDHVIREVDHVIG-IHKIEKEVDHVIREV 191
Score = 30.3 bits (65), Expect = 1.8
Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Frame = +3
Query: 69 VRVQVGEIVLHHDHLRGVHGLAGVRHAEVFSVDHYVSELHVVSEEARHV-NRSVKWISER 245
+ +G ++ DH+ G+H + + VDH + +H + +E HV + V + E
Sbjct: 79 IETDMGHVIREVDHVIGIHKIEKEVDHVIREVDHVIG-IHKIEKEVDHVIKQKVGHVIEV 137
Query: 246 HGGDT 260
H +T
Sbjct: 138 HKIET 142
>SB_53470| Best HMM Match : E-MAP-115 (HMM E-Value=7.6)
Length = 192
Score = 29.5 bits (63), Expect = 3.1
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 6/73 (8%)
Frame = -1
Query: 219 D*HGELLH*QHEVR*---RNDLQKRPRHVEHQQDRGHLGDGHDEGRSHLPGLGH---AGQ 58
D H E + +HE R RND ++ RH + D D HDE R+ H +
Sbjct: 121 DRHDEERNNEHEDRHDKGRNDDEEEDRHDGERNDDEE-EDRHDEERNDDEEDRHDEKRNE 179
Query: 57 EDLQRRHDDEQHD 19
++ + RHD+++HD
Sbjct: 180 DEEEDRHDEDRHD 192
Score = 29.1 bits (62), Expect = 4.1
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Frame = -1
Query: 174 RNDLQKRPRHVEHQQDRGHLGDGHDEGRSHLPGLGHAGQEDLQR--RHDDEQHDELITRH 1
RN+ + RH E + D DGHDE R++ H + + + RHD+E+++E +H
Sbjct: 43 RNN-EHEDRHDEERNDEDE--DGHDEERNNEHEDRHDEERNNEHEDRHDEERNNEEEDKH 99
Score = 29.1 bits (62), Expect = 4.1
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 5/78 (6%)
Frame = -1
Query: 219 D*HGELLH*QHEVR*RNDLQKRPRHVE-HQQDRGHLG-DGHDEGRSHLPGLGH---AGQE 55
D H E + +HE R +D ++ H + H ++R + D HDE R++ H E
Sbjct: 61 DGHDEERNNEHEDR--HDEERNNEHEDRHDEERNNEEEDKHDEERNNEHEDRHDEERNNE 118
Query: 54 DLQRRHDDEQHDELITRH 1
D + RHD+E+++E RH
Sbjct: 119 D-EDRHDEERNNEHEDRH 135
Score = 28.7 bits (61), Expect = 5.5
Identities = 17/58 (29%), Positives = 30/58 (51%)
Frame = -1
Query: 174 RNDLQKRPRHVEHQQDRGHLGDGHDEGRSHLPGLGHAGQEDLQRRHDDEQHDELITRH 1
R+D ++ H E + D+G D +E R G ++ + RHD+E++D+ RH
Sbjct: 122 RHDEERNNEH-EDRHDKGR-NDDEEEDRHD----GERNDDEEEDRHDEERNDDEEDRH 173
>SB_27251| Best HMM Match : Extensin_2 (HMM E-Value=0.077)
Length = 1043
Score = 29.1 bits (62), Expect = 4.1
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Frame = -1
Query: 105 HDEGRSHLPGLGHA-GQEDLQRRHD--DEQH 22
H+EG+ LPG H+ GQ +Q+R + EQH
Sbjct: 789 HEEGQQQLPGGNHSPGQHHMQQRREALPEQH 819
>SB_40683| Best HMM Match : VWD (HMM E-Value=2.4e-05)
Length = 2200
Score = 29.1 bits (62), Expect = 4.1
Identities = 12/48 (25%), Positives = 25/48 (52%)
Frame = +3
Query: 390 QHKSLRESVARLAPPVLDHCLAISGRHHFAFHYTTSRKVLWDKSLHIH 533
++ LR++ ++ + +H L HH +Y S K+L ++ H+H
Sbjct: 1563 RYAELRKTAEKVYQSIAEHRLTQKYIHHSKEYYRHSSKILKSRTRHLH 1610
>SB_45773| Best HMM Match : TFIIB (HMM E-Value=0.0018)
Length = 242
Score = 28.7 bits (61), Expect = 5.5
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = +3
Query: 273 TSTTVLHHGHVQCGQEHTGADRRHDDVHLHLQTSNRTEGQHKSLRESVA 419
TS TV+HH H G+ ++ + L+ +T NR+ +++ +S A
Sbjct: 179 TSLTVVHHIHDVMGKFSASPTQKGEVAQLYYRTKNRSSKLNRARPQSFA 227
>SB_45143| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 119
Score = 28.7 bits (61), Expect = 5.5
Identities = 18/47 (38%), Positives = 24/47 (51%)
Frame = -1
Query: 390 APRYDWRFGDADVRHRVAGPHRYALAHIGHDHDEGPLCLSLELMYLH 250
A R+D GD DV+ +VA H HDHD + L+L YL+
Sbjct: 21 ASRHD--HGDGDVKIKVASRHD---PDKRHDHDNDTITLALRSRYLY 62
>SB_4869| Best HMM Match : Coprinus_mating (HMM E-Value=2.8)
Length = 796
Score = 28.7 bits (61), Expect = 5.5
Identities = 16/36 (44%), Positives = 17/36 (47%)
Frame = +2
Query: 398 VSEGIRCETCTTSP*PLSGHLRKASFRFPLHDESKG 505
VSE C + PLSGH R S PL D S G
Sbjct: 501 VSETTSCPSIDDPDGPLSGHTRPFSSMEPLSDPSAG 536
>SB_14655| Best HMM Match : Ketoacyl-synt_C (HMM E-Value=0)
Length = 2232
Score = 28.3 bits (60), Expect = 7.2
Identities = 23/96 (23%), Positives = 44/96 (45%)
Frame = +1
Query: 19 IMLLIIMTSL*VLLTSMSESR*VRSSFIMTISEVSTVLLVFDMPRSFL*IITSANFMLLV 198
I LL + L ++ S+ + + SF+M E+ T+L +FD+P + L + S F + +
Sbjct: 445 ISLLCVTVVLFLVTASIRATIIIFFSFLMLALELVTLLCLFDVPLNQLTFVCS--FPVFI 502
Query: 199 KKLAMSIGLSNGYPRGMVEIHELQRQAQRSFIMVMS 306
SI +S + R +F+ ++S
Sbjct: 503 LSFLWSISVSQVFLISRFGPGRTTRTVNSTFVPLLS 538
>SB_48142| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 371
Score = 28.3 bits (60), Expect = 7.2
Identities = 22/58 (37%), Positives = 26/58 (44%)
Frame = +3
Query: 396 KSLRESVARLAPPVLDHCLAISGRHHFAFHYTTSRKVLWDKSLHIHGATDDGVLSVDQ 569
KSL+ES A DHCLA G +H A T R LH T +G L D+
Sbjct: 51 KSLQESNAEYC----DHCLACGGDNHKARFCTLRRSF---TKLHTQNITRNGKLRWDK 101
>SB_16746| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 613
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -1
Query: 654 SQVRLHGQAHERQRQTPRHVRAGQLYVQTGQRK 556
+Q +LH + E Q+Q PR VR Q +Q R+
Sbjct: 12 AQQQLHRRVREAQQQLPRRVRGAQQQLQRRVRE 44
>SB_25956| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1146
Score = 27.9 bits (59), Expect = 9.5
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 6/70 (8%)
Frame = -1
Query: 192 QHEVR*RNDLQKRPRHVEHQQDRGHLGDGHDEGRSHLPGLGHAGQED----LQRRHDDEQ 25
QH D ++ +H + QQ+ G HD+ + H H Q+ Q+RHD +Q
Sbjct: 1064 QHPSEQETDHEQPAQHDQQQQNTGQQQQ-HDKQQQHDQQQQHDQQQQHDQQQQQRHDQQQ 1122
Query: 24 --HDELITRH 1
HD+ +H
Sbjct: 1123 QHHDQQQQQH 1132
>SB_31213| Best HMM Match : SNF2_N (HMM E-Value=0)
Length = 919
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Frame = -1
Query: 141 EHQQDRGHLGDGHDEGR--SHLPGLGHAGQEDLQRRHDDEQHD 19
+HQQD+ H H R H GH+ E RR D H+
Sbjct: 429 KHQQDQHHHHHHHHHHRHHKHRSSSGHSTTEASGRRASDHSHE 471
>SB_805| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1270
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/52 (25%), Positives = 24/52 (46%)
Frame = -1
Query: 189 HEVR*RNDLQKRPRHVEHQQDRGHLGDGHDEGRSHLPGLGHAGQEDLQRRHD 34
+ +R R++ + H+ R L D H+ R+ L A + L+ RH+
Sbjct: 953 NRLRDRHEASRNRLRDRHEASRNRLRDRHEASRNRLRNRHEASRNRLRDRHE 1004
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,256,735
Number of Sequences: 59808
Number of extensions: 593839
Number of successful extensions: 1904
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1894
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2083999566
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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