Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10a15r
         (748 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    26   0.43 
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    26   0.43 
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    24   1.7  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    21   9.3  

>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 25.8 bits (54), Expect = 0.43
 Identities = 9/37 (24%), Positives = 16/37 (43%)
 Frame = +3

Query: 507 CVGCIFALLISKASWYAFCESSTTECLVSPVATSARY 617
           C  CI   + S   W  +C S+   C+ +  +   R+
Sbjct: 35  CRNCIHPTVFSVLFWLGYCNSAINPCIYALFSKDFRF 71


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 25.8 bits (54), Expect = 0.43
 Identities = 9/37 (24%), Positives = 16/37 (43%)
 Frame = +3

Query: 507 CVGCIFALLISKASWYAFCESSTTECLVSPVATSARY 617
           C  CI   + S   W  +C S+   C+ +  +   R+
Sbjct: 483 CRNCIHPTVFSVLFWLGYCNSAINPCIYALFSKDFRF 519


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = +1

Query: 118 RLLTFLQATARVGFGDDTAPDDVLEC 195
           RL T LQAT   G   +  P DV EC
Sbjct: 131 RLNTRLQATLNCGLRLEKFPFDVQEC 156


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = -1

Query: 721 NLLRRLGLXDKHLIPKASNPESKVFYL 641
           N++R  G+  +  I  A NP ++ +Y+
Sbjct: 97  NVIRHFGIVGECNIQYALNPNTEEYYI 123


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,155
Number of Sequences: 438
Number of extensions: 3659
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23388480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)