Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10a14r
         (745 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g64255.1 68414.m07280 SWIM zinc finger family protein contain...    35   0.065
At5g62220.1 68418.m07813 exostosin family protein contains Pfam ...    30   1.4  
At5g59210.2 68418.m07421 myosin heavy chain-related contains wea...    30   1.4  
At5g59210.1 68418.m07420 myosin heavy chain-related contains wea...    30   1.4  
At1g64260.1 68414.m07281 zinc finger protein-related contains Pf...    30   1.4  
At1g49920.1 68414.m05598 zinc finger protein-related weak simila...    29   2.5  
At5g65450.1 68418.m08231 ubiquitin carboxyl-terminal hydrolase f...    28   5.7  
At4g16050.1 68417.m02435 expressed protein                             28   5.7  

>At1g64255.1 68414.m07280 SWIM zinc finger family protein contains
           Pfam profile PF04434: SWIM zinc finger
          Length = 750

 Score = 34.7 bits (76), Expect = 0.065
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -3

Query: 602 LIIDKRRNTMEYCYKLWVGNGQDIVKKYFPLSF 504
           +++D +    EY  KL + +G D   KYFPL+F
Sbjct: 386 IVVDTKNLNCEYQLKLMIASGVDAANKYFPLAF 418


>At5g62220.1 68418.m07813 exostosin family protein contains Pfam
           profile: PF03016 Exostosin family
          Length = 517

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 21/61 (34%), Positives = 36/61 (59%), Gaps = 4/61 (6%)
 Frame = +1

Query: 61  PETSPSCPTAL----RSPEAFTIVSSSKASLNSRL*MKNRTSFSYLAGWKNHCSLVLSAL 228
           P ++PS P  L    R+P++ T +   K S NS   + NR+S  Y+A  ++HC+ ++ +L
Sbjct: 3   PVSNPSSPEHLLKKSRTPDSTTSIDR-KNSFNSLHSVGNRSS--YIAASRSHCTWLILSL 59

Query: 229 L 231
           L
Sbjct: 60  L 60


>At5g59210.2 68418.m07421 myosin heavy chain-related contains weak
           similarity to Myosin heavy chain, gizzard smooth muscle
           (Swiss-Prot:P10587) [Gallus gallus]
          Length = 433

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
 Frame = -3

Query: 740 MSXSNQDLE-DKLY--NSILTGDYDSAVRKSLEYESQGQGSIVQNVVNNLIIDKRR 582
           M   NQ  E +KL+  NS L+  Y  ++  S ++E+Q +  + QNV    ++DK R
Sbjct: 288 MEIDNQSSEIEKLFEENSNLSASYQESINISNQWENQVKECLKQNVELREVLDKLR 343


>At5g59210.1 68418.m07420 myosin heavy chain-related contains weak
           similarity to Myosin heavy chain, gizzard smooth muscle
           (Swiss-Prot:P10587) [Gallus gallus]
          Length = 434

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
 Frame = -3

Query: 740 MSXSNQDLE-DKLY--NSILTGDYDSAVRKSLEYESQGQGSIVQNVVNNLIIDKRR 582
           M   NQ  E +KL+  NS L+  Y  ++  S ++E+Q +  + QNV    ++DK R
Sbjct: 289 MEIDNQSSEIEKLFEENSNLSASYQESINISNQWENQVKECLKQNVELREVLDKLR 344


>At1g64260.1 68414.m07281 zinc finger protein-related contains Pfam
           profiles PF03108: MuDR family transposase, PF04434: SWIM
           zinc finger
          Length = 719

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -3

Query: 602 LIIDKRRNTMEYCYKLWVGNGQDIVKKYFPLSF 504
           +++D +    +Y  KL + +G D   K+FPL+F
Sbjct: 379 IVVDTKSLNGKYQLKLMIASGVDAANKFFPLAF 411


>At1g49920.1 68414.m05598 zinc finger protein-related weak
           similarity to mudrA [Zea mays] GI:540581, MURAZC [Zea
           mays] GI:1857256; contains Pfam profiles PF03108: MuDR
           family transposase, PF04434: SWIM zinc finger
          Length = 785

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 22/76 (28%), Positives = 36/76 (47%)
 Frame = -3

Query: 731 SNQDLEDKLYNSILTGDYDSAVRKSLEYESQGQGSIVQNVVNNLIIDKRRNTMEYCYKLW 552
           SN  L D  Y+S LT D + A  + L +         Q+    +++D +    +Y  KL 
Sbjct: 340 SNGLLVDWQYDS-LTHDPEHASFRGLFWAFSQSIQGFQHCRPLIVVDTKNLGGKYKMKLM 398

Query: 551 VGNGQDIVKKYFPLSF 504
           + +  D   +YFPL+F
Sbjct: 399 IASAFDATNQYFPLAF 414


>At5g65450.1 68418.m08231 ubiquitin carboxyl-terminal hydrolase
           family protein / zinc finger (MYND type) family protein
           similar to ubiquitin-specific protease 16 (UBP16)
           [Arabidopsis thaliana] GI:11993477; contains Pfam
           profiles PF00443: Ubiquitin carboxyl-terminal hydrolase,
           PF01753: MYND finger
          Length = 731

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 19/77 (24%), Positives = 35/77 (45%)
 Frame = +1

Query: 85  TALRSPEAFTIVSSSKASLNSRL*MKNRTSFSYLAGWKNHCSLVLSALLPPYTTRSRALQ 264
           T+  S  +  + SSS   L S+   K + S +  +G K     V+    PP +++     
Sbjct: 244 TSEPSSASAAMSSSSTLLLPSKANSKPKVSQASSSGLKTSVQKVVQHFRPPQSSKKSQPS 303

Query: 265 LQVDVLIFKYWLYLVLW 315
             +D + F Y L++ L+
Sbjct: 304 SSIDEMSFSYELFVKLY 320


>At4g16050.1 68417.m02435 expressed protein
          Length = 666

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = -3

Query: 194 QPAKYENDVLFFIYNREFNDALELDTIVNASGDRKAVGHDGEVSGLPE 51
           + A+ E+D    I  R  N   + D I N  G+R  +  D  VSGLP+
Sbjct: 535 ESAETEDDDNMTIAQR-INSRKKSDDIENTEGERSRLVADNNVSGLPQ 581


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,780,805
Number of Sequences: 28952
Number of extensions: 294332
Number of successful extensions: 832
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 832
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1643603136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)