Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10a14f
         (648 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    25   0.48 
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    23   2.5  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   4.4  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    22   5.9  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 25.4 bits (53), Expect = 0.48
 Identities = 17/57 (29%), Positives = 29/57 (50%)
 Frame = +3

Query: 132 QDLEDKLYNSILTGDYDSAVRKSLEYESQGQGSIVQNVVNNLIIDKRRNTMEYCYKL 302
           ++ E ++ ++IL G YD+ +R S E  + G   +  N+    I      TMEY  +L
Sbjct: 29  REKEKEVLDNIL-GGYDARIRPSGENATDGPAVVRVNIFVRSISKIDDVTMEYSVQL 84


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 16/57 (28%), Positives = 28/57 (49%)
 Frame = +3

Query: 132 QDLEDKLYNSILTGDYDSAVRKSLEYESQGQGSIVQNVVNNLIIDKRRNTMEYCYKL 302
           ++ E ++ ++IL G YD+ +R S E  + G   +  N+    I       MEY  +L
Sbjct: 29  REKEKEVLDNIL-GGYDARIRPSGENATDGPAIVRVNLFVRSIATISDIKMEYSVQL 84


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +3

Query: 27  KAPNKMKLLVVFAMCVLAASAGVVELSADSMSPSNQ 134
           KAP ++ + V+     L+ASA V+ LS+ S++   Q
Sbjct: 174 KAPAQIPVDVLVLTVTLSASAMVLGLSSYSLTEFQQ 209


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +2

Query: 557 QPVLEDEYVDLQLQRSG 607
           +PV+ +E VD  L++SG
Sbjct: 168 KPVVAEETVDYMLEKSG 184


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,413
Number of Sequences: 438
Number of extensions: 3458
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)