Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10a13r
         (749 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54925| Best HMM Match : MFS_1 (HMM E-Value=4.7e-27)                 34   0.11 
SB_37769| Best HMM Match : Endonuclease_5 (HMM E-Value=2.8)            32   0.57 
SB_8967| Best HMM Match : RVT_1 (HMM E-Value=7.6e-18)                  31   1.00 
SB_46333| Best HMM Match : EGF (HMM E-Value=1.10001e-40)               30   2.3  
SB_40160| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.3  
SB_37201| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_37925| Best HMM Match : SAP (HMM E-Value=0.065)                     29   4.0  
SB_24369| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_1120| Best HMM Match : SAP (HMM E-Value=0.065)                      29   4.0  
SB_51704| Best HMM Match : F-box (HMM E-Value=3.3e-05)                 29   5.3  
SB_42301| Best HMM Match : Keratin_B2 (HMM E-Value=1.2)                29   5.3  
SB_40572| Best HMM Match : Ank (HMM E-Value=0.0017)                    29   5.3  
SB_27040| Best HMM Match : Lac_bphage_repr (HMM E-Value=1.7)           29   5.3  
SB_56374| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.3  

>SB_54925| Best HMM Match : MFS_1 (HMM E-Value=4.7e-27)
          Length = 1373

 Score = 34.3 bits (75), Expect = 0.11
 Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = +3

Query: 321 FSFRISY-KLLIVLVA*FNNIKSFTFSIDVSGSGGSILIFIMLFNLLCKIKHIKYNF 488
           F+F + Y   L+VL+  FN   S    I VSGSG   L+  M+ + +C+   ++  F
Sbjct: 155 FAFSLMYFASLVVLIEYFNRHLSLANGIAVSGSGAGTLVISMIVDEMCRRYGLRAGF 211


>SB_37769| Best HMM Match : Endonuclease_5 (HMM E-Value=2.8)
          Length = 651

 Score = 31.9 bits (69), Expect = 0.57
 Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
 Frame = -2

Query: 373 LNHATKTINNLYEILN--ENGHTEFQIECFNGCKMFIEDYCERNERKVQSVL-HLDLIRF 203
           L    K+ NNL  IL+  ENG  +F  +  +  +  +E Y    ERK + +L H DL+  
Sbjct: 22  LEDLKKSRNNLVTILSKIENGQQQFDRDFVSEFRCLLESY-GNTERKTKELLTHFDLLE- 79

Query: 202 VTESEILICQCCDEQLNRFSCKE 134
             E E L+        ++FSC E
Sbjct: 80  -KELEQLLDIRNSTVADKFSCGE 101


>SB_8967| Best HMM Match : RVT_1 (HMM E-Value=7.6e-18)
          Length = 483

 Score = 31.1 bits (67), Expect = 1.00
 Identities = 28/112 (25%), Positives = 40/112 (35%)
 Frame = -2

Query: 598 YRDCLNLLRYRTMKLKELPSADYDKLYQDGHTDVYKMKLYLICLILHNKLKSIMNISMEP 419
           Y   L   R +  +L  L   D + +Y          K +LI  I H   K++ N  M P
Sbjct: 28  YDIVLTWCRSKMKQLNSLRQEDIEPIYLFITGGAGAGKSHLIKTIYHTVTKTMRNAPMNP 87

Query: 418 PLPETSIEKVKDFILLNHATKTINNLYEILNENGHTEFQIECFNGCKMFIED 263
            LP   +    +   +N    TIN    I  + G     I  F      +ED
Sbjct: 88  ELPSVLLMAPTEVAAINIEGTTINTALAIPVQTGDNVPPI--FRAASQTVED 137


>SB_46333| Best HMM Match : EGF (HMM E-Value=1.10001e-40)
          Length = 580

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 13/43 (30%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = -2

Query: 604 LNYRDCLNLLRYRT-MKLKELPSADYDKLYQDGHTDVYKMKLY 479
           + +R    LL Y+T + ++E+   D+D  Y++G+  + K+K Y
Sbjct: 533 MTWRSDGGLLTYKTALPVREMRFGDFDSSYEEGYHTLGKLKCY 575


>SB_40160| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 302

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = -2

Query: 601 NYRDCLNLLRYRTMKLKELPSADYDKLYQDGHTDVYK 491
           +Y DC+++LRY+   L+ +P+   ++ + D   D  K
Sbjct: 88  SYHDCMDVLRYQLKPLRSMPAVILEQEFLDHMVDSIK 124


>SB_37201| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 450

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 7/85 (8%)
 Frame = -2

Query: 415 LPETSIEKVKDFILLNHATKTINNLYEILNEN-------GHTEFQIECFNGCKMFIEDYC 257
           LPE   ++VK++I L  + +T+   YE             H  F +E +   K+F     
Sbjct: 187 LPEIIADQVKEWIDLFCSCRTVAEGYERARVTPYMHILFAHVPFFVEKYKCIKIFTGQGV 246

Query: 256 ERNERKVQSVLHLDLIRFVTESEIL 182
           E+N    +SVLH    ++ +  +IL
Sbjct: 247 EKNNDVARSVLHRKSNKWDSVGDIL 271


>SB_37925| Best HMM Match : SAP (HMM E-Value=0.065)
          Length = 198

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 7/85 (8%)
 Frame = -2

Query: 415 LPETSIEKVKDFILLNHATKTINNLYEILNEN-------GHTEFQIECFNGCKMFIEDYC 257
           LPE   ++VK++I L  + +T+   YE             H  F +E +   K+F     
Sbjct: 6   LPEIIADQVKEWIDLFCSCRTVAEGYERARVTPYMHILFAHVPFFVEKYKCIKIFTGQGV 65

Query: 256 ERNERKVQSVLHLDLIRFVTESEIL 182
           E+N    +SVLH    ++ +  +IL
Sbjct: 66  EKNNDVARSVLHRKSNKWDSVGDIL 90


>SB_24369| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 478

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
 Frame = -2

Query: 589 CLNLLRYRTMKLKELPSADYDKLYQDGHTDVYKMKLYLICLILHNKL--KSIMNISMEPP 416
           C+     +T    E P+   + + QD H     + L+ +  ILH+ L  +   N +M PP
Sbjct: 320 CITYSHNKTTSTDEDPTPKDETMSQDPHEQPEALNLHPLEYILHSLLRRRHKQNQTMAPP 379

Query: 415 LPETS 401
            P T+
Sbjct: 380 NPVTA 384


>SB_1120| Best HMM Match : SAP (HMM E-Value=0.065)
          Length = 198

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 7/85 (8%)
 Frame = -2

Query: 415 LPETSIEKVKDFILLNHATKTINNLYEILNEN-------GHTEFQIECFNGCKMFIEDYC 257
           LPE   ++VK++I L  + +T+   YE             H  F +E +   K+F     
Sbjct: 6   LPEIIADQVKEWIDLFCSCRTVAEGYERARVTPYMHILFAHVPFFVEKYKCIKIFTGQGV 65

Query: 256 ERNERKVQSVLHLDLIRFVTESEIL 182
           E+N    +SVLH    ++ +  +IL
Sbjct: 66  EKNNDVARSVLHRKSNKWDSVGDIL 90


>SB_51704| Best HMM Match : F-box (HMM E-Value=3.3e-05)
          Length = 337

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 22/98 (22%), Positives = 43/98 (43%), Gaps = 8/98 (8%)
 Frame = -2

Query: 526 KLYQDGHTDVYKMKLYLICLILHNKLKSIMNISMEPPLPETSIEKVKDFILLN------H 365
           K   +    V++ +L +   +LH   +   N   +  +P+     + D I ++      H
Sbjct: 67  KFSSEDWRQVFRERLQIEQKVLHLIERLTRNAFFKADVPDKQYTDMTDIIEMHDCDSKGH 126

Query: 364 ATKTINNLYEI-LNENGHTEFQ-IECFNGCKMFIEDYC 257
              T+  L E+ L     +++Q I+CFNG +   +D C
Sbjct: 127 IENTLVELIEVDLRAADGSDYQYIDCFNGGRFLSKDQC 164


>SB_42301| Best HMM Match : Keratin_B2 (HMM E-Value=1.2)
          Length = 600

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
 Frame = -2

Query: 214 LIRFVTESEILICQCCDEQLNRFSCKEGHLNMFCS---LTFTQINSD 83
           L R    S+IL   C DE L+R S     L+  CS   L+   INSD
Sbjct: 338 LSRVTINSDILSSVCSDEGLSRVSINSDTLSPVCSDVGLSRVTINSD 384



 Score = 27.9 bits (59), Expect = 9.3
 Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
 Frame = -2

Query: 214 LIRFVTESEILICQCCDEQLNRFSCKEGHLNMFCS---LTFTQINSD 83
           L R    S+IL   C DE L+R S     L+  CS   L+   INSD
Sbjct: 205 LSRVSRNSDILSPVCSDEGLSRVSINSDTLSPLCSDEGLSRVSINSD 251


>SB_40572| Best HMM Match : Ank (HMM E-Value=0.0017)
          Length = 205

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 16/57 (28%), Positives = 26/57 (45%)
 Frame = -2

Query: 181 ICQCCDEQLNRFSCKEGHLNMFCSLTFTQINSDEYLVCKACNATARSELYNIDPMCV 11
           I Q   + L + SC+EG   +  +L  T +   +Y   K   + ++S    I P CV
Sbjct: 11  IAQMVQDFLGKLSCEEGTAELRDALNLTLLYMQKYY--KTLRSRSQSNTNGISPRCV 65


>SB_27040| Best HMM Match : Lac_bphage_repr (HMM E-Value=1.7)
          Length = 276

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 7/85 (8%)
 Frame = -2

Query: 415 LPETSIEKVKDFILLNHATKTINNLYEILNEN-------GHTEFQIECFNGCKMFIEDYC 257
           LPE   ++VK++I L  + +T+   YE             H  F +E +   K+F     
Sbjct: 163 LPEIIADQVKEWIDLFCSCRTVAEGYERARVTPYMHILFAHVPFFVEKYKCIKIFTGHGV 222

Query: 256 ERNERKVQSVLHLDLIRFVTESEIL 182
           E+N    +SVLH    ++ +  +IL
Sbjct: 223 EKNNDVARSVLHRKSNKWDSVGDIL 247


>SB_56374| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 483

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 20/74 (27%), Positives = 35/74 (47%)
 Frame = -2

Query: 607 LLNYRDCLNLLRYRTMKLKELPSADYDKLYQDGHTDVYKMKLYLICLILHNKLKSIMNIS 428
           L  Y  CLNLL++    L    + D  ++ +  H   Y++K   I LI   K+K  + + 
Sbjct: 272 LSTYNKCLNLLKWIDNVLDSTINKDLVQVRKQFHEKYYELKEERINLI-QAKIKEKLGMD 330

Query: 427 MEPPLPETSIEKVK 386
           M   L +   ++V+
Sbjct: 331 MTLELNKGEFKEVE 344


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,966,359
Number of Sequences: 59808
Number of extensions: 434345
Number of successful extensions: 1059
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 990
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1056
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)