Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10a13r
         (749 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70287-8|CAA94301.2| 1717|Caenorhabditis elegans Hypothetical pr...    33   0.29 
U40940-3|AAN39667.1|  455|Caenorhabditis elegans Nuclear hormone...    29   2.7  
U40940-1|AAM69089.1|  439|Caenorhabditis elegans Nuclear hormone...    29   2.7  
AF273782-1|AAG15131.1|  439|Caenorhabditis elegans nuclear recep...    29   2.7  
U80030-3|AAG24160.2|  367|Caenorhabditis elegans Serpentine rece...    28   8.1  

>Z70287-8|CAA94301.2| 1717|Caenorhabditis elegans Hypothetical
           protein R09E10.7 protein.
          Length = 1717

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 26/93 (27%), Positives = 47/93 (50%), Gaps = 7/93 (7%)
 Frame = -2

Query: 457 NKLKSIMNISMEPPLPETSIEKVKDFILLNHAT----KTINNL---YEILNENGHTEFQI 299
           N+LK++  I++ PP+P    +     +L NH T    +TI N+   Y + ++N   +F +
Sbjct: 510 NRLKNM--ITLAPPIPAEVTQTTDATVLSNHQTAAILQTITNMDIRYPLSSQN--MKFTL 565

Query: 298 ECFNGCKMFIEDYCERNERKVQSVLHLDLIRFV 200
            CF G    I+     NE+ ++  +  D I +V
Sbjct: 566 NCFPGFYPAIQMCNYLNEKDIRFGVPTDAIFYV 598


>U40940-3|AAN39667.1|  455|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 40, isoform c protein.
          Length = 455

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 25/78 (32%), Positives = 37/78 (47%)
 Frame = -2

Query: 373 LNHATKTINNLYEILNENGHTEFQIECFNGCKMFIEDYCERNERKVQSVLHLDLIRFVTE 194
           +N +T + + +  IL EN H  +  E  N  K  IED   R E +V+S+   +  RF  E
Sbjct: 145 INTSTPSSSTMINIL-ENDHHSYDPEAQNDVKAVIEDLL-RLESRVKSL--RNSYRF--E 198

Query: 193 SEILICQCCDEQLNRFSC 140
           S++    C       FSC
Sbjct: 199 SQVSATSCMYSSFLFFSC 216


>U40940-1|AAM69089.1|  439|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 40, isoform a protein.
          Length = 439

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 25/78 (32%), Positives = 37/78 (47%)
 Frame = -2

Query: 373 LNHATKTINNLYEILNENGHTEFQIECFNGCKMFIEDYCERNERKVQSVLHLDLIRFVTE 194
           +N +T + + +  IL EN H  +  E  N  K  IED   R E +V+S+   +  RF  E
Sbjct: 129 INTSTPSSSTMINIL-ENDHHSYDPEAQNDVKAVIEDLL-RLESRVKSL--RNSYRF--E 182

Query: 193 SEILICQCCDEQLNRFSC 140
           S++    C       FSC
Sbjct: 183 SQVSATSCMYSSFLFFSC 200


>AF273782-1|AAG15131.1|  439|Caenorhabditis elegans nuclear receptor
           NHR-40 protein.
          Length = 439

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 25/78 (32%), Positives = 37/78 (47%)
 Frame = -2

Query: 373 LNHATKTINNLYEILNENGHTEFQIECFNGCKMFIEDYCERNERKVQSVLHLDLIRFVTE 194
           +N +T + + +  IL EN H  +  E  N  K  IED   R E +V+S+   +  RF  E
Sbjct: 129 INTSTPSSSTMINIL-ENDHHSYDPEAQNDVKAVIEDLL-RLESRVKSL--RNSYRF--E 182

Query: 193 SEILICQCCDEQLNRFSC 140
           S++    C       FSC
Sbjct: 183 SQVSATSCMYSSFLFFSC 200


>U80030-3|AAG24160.2|  367|Caenorhabditis elegans Serpentine
           receptor, class w protein115 protein.
          Length = 367

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = +1

Query: 472 ILNTISFCKHLYVHLDIAYHNQLTAILLIS*FYTSA 579
           +L T++ C HL+V L I+ H + TAI + S  Y ++
Sbjct: 313 MLITLNTCTHLFVCLIISSHYRSTAIYVFSCGYINS 348


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,046,649
Number of Sequences: 27780
Number of extensions: 362707
Number of successful extensions: 1011
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 976
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1011
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)