Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10a13r
         (749 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               25   1.0  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   5.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   5.3  
U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.              22   7.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   9.3  

>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 11/49 (22%), Positives = 20/49 (40%)
 Frame = -2

Query: 184 LICQCCDEQLNRFSCKEGHLNMFCSLTFTQINSDEYLVCKACNATARSE 38
           +I QC D   N   C        C + + + +  +Y++  A + T   E
Sbjct: 97  IIRQCVDNAKNEDKCLTAQKFSRCVIDYVKFHITQYMISNANSNTTSEE 145


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 12/42 (28%), Positives = 19/42 (45%)
 Frame = -2

Query: 433  ISMEPPLPETSIEKVKDFILLNHATKTINNLYEILNENGHTE 308
            I+  PPLPE     ++ F +    T + N  Y   + +G  E
Sbjct: 1025 ITWSPPLPELRHGDIQGFNVGYRETSSSNPSYNFSSVSGDGE 1066


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 12/42 (28%), Positives = 19/42 (45%)
 Frame = -2

Query: 433  ISMEPPLPETSIEKVKDFILLNHATKTINNLYEILNENGHTE 308
            I+  PPLPE     ++ F +    T + N  Y   + +G  E
Sbjct: 1021 ITWSPPLPELRHGDIQGFNVGYRETSSSNPSYNFSSVSGDGE 1062


>U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.
          Length = 182

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 230 TLNFPFISLTIIFYKHLASIETFNLKLCMT 319
           +L  P+I+  II+ K +  +E     LCMT
Sbjct: 140 SLFVPYITNFIIYSKRMDVLEATLRVLCMT 169


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = +1

Query: 568 YTSANLSNPDNSV 606
           YT   LSNPD SV
Sbjct: 723 YTDLKLSNPDISV 735


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,002
Number of Sequences: 438
Number of extensions: 4068
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)