Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10a13r
         (749 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g62660.1 68418.m07864 F-box family protein contains Pfam prof...    30   1.9  
At5g66790.1 68418.m08420 protein kinase family protein contains ...    28   5.8  
At5g40020.1 68418.m04853 pathogenesis-related thaumatin family p...    28   5.8  
At4g32970.1 68417.m04690 expressed protein low similarity to SP|...    28   5.8  
At2g19090.1 68415.m02229 expressed protein contains Pfam profile...    28   5.8  
At1g69420.2 68414.m07975 zinc finger (DHHC type) family protein ...    28   7.6  
At1g69420.1 68414.m07974 zinc finger (DHHC type) family protein ...    28   7.6  

>At5g62660.1 68418.m07864 F-box family protein contains Pfam
           profile: PF00646 F-box domain
          Length = 379

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = -2

Query: 703 RKLRNRIETCFMTTENTMDNVFSVLLDNPTKSLLNYRDCLNLL 575
           RK R RIE   +  E  +D +  +L   P KSL+ ++ C++ L
Sbjct: 26  RKRRRRIEDALVAPEIPLDLLIEILTKLPAKSLMRFK-CVSKL 67


>At5g66790.1 68418.m08420 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 622

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
 Frame = -2

Query: 346 NLYEILNENGHTEFQIECFNGCKMFIE--DYCERNERKVQSVLHLDLIRFVTESEILICQ 173
           N  EI  E    EF ++      +++E    C+RN RK++ +   +L     ++ IL+ Q
Sbjct: 50  NCSEITGEAVIGEFAVQEVTNSNIYVEIPPVCKRNIRKIEQLFRENLAPSKLQNIILV-Q 108

Query: 172 CCDEQLNRFSC 140
            C +Q    +C
Sbjct: 109 GCKKQNKSSNC 119


>At5g40020.1 68418.m04853 pathogenesis-related thaumatin family
           protein similar to SP|P50699 Thaumatin-like protein
           precursor {Arabidopsis thaliana}, pathogenesis-related
           group 5 protein [Brassica rapa] GI:2749943; contains
           Pfam profile PF00314: Thaumatin family
          Length = 256

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 586 SNPDNSVSSLLGCPGELKTRCPLYFQL 666
           S P +S  ++LGC  +LKT CP   Q+
Sbjct: 147 SKPVSSKCTILGCHKDLKTTCPEELQV 173


>At4g32970.1 68417.m04690 expressed protein low similarity to
           SP|Q13061 Triadin {Homo sapiens}
          Length = 750

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = -2

Query: 415 LPETSIEKVKDFILLNHATKTINNLYEI--LNENGH 314
           LPETSIE +K FI        +  +  I  +NENGH
Sbjct: 445 LPETSIETLKSFICKKKMNVILAYVGTISSMNENGH 480


>At2g19090.1 68415.m02229 expressed protein contains Pfam profiles:
           PF04782 protein of unknown function (DUF632), PF04783
           protein of unknown function (DUF630); expression
           supported by MPSS
          Length = 814

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -3

Query: 651 WTTCFQFSWTTQQRAY 604
           W TCF+F W T QR+Y
Sbjct: 640 WRTCFEF-WITSQRSY 654


>At1g69420.2 68414.m07975 zinc finger (DHHC type) family protein
           contains Pfam profile: PF01529: DHHC zinc finger domain
          Length = 596

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
 Frame = -2

Query: 271 IEDYCERNERKVQSVLHLDLIRFVTESEILICQCC---DEQLNRFSCKEGHLNMFCSLTF 101
           +ED    + +K++S     L+R +     L+C CC   DE   + S ++G    +CSL  
Sbjct: 113 VEDTENGSNKKLESSERSSLLRLLCSPCALLCSCCSGKDESSEQMS-EDG--MFYCSLCE 169

Query: 100 TQI--NSDEYLVCKAC 59
            ++   S    VC  C
Sbjct: 170 VEVFKYSKHCRVCDKC 185


>At1g69420.1 68414.m07974 zinc finger (DHHC type) family protein
           contains Pfam profile: PF01529: DHHC zinc finger domain
          Length = 596

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
 Frame = -2

Query: 271 IEDYCERNERKVQSVLHLDLIRFVTESEILICQCC---DEQLNRFSCKEGHLNMFCSLTF 101
           +ED    + +K++S     L+R +     L+C CC   DE   + S ++G    +CSL  
Sbjct: 113 VEDTENGSNKKLESSERSSLLRLLCSPCALLCSCCSGKDESSEQMS-EDG--MFYCSLCE 169

Query: 100 TQI--NSDEYLVCKAC 59
            ++   S    VC  C
Sbjct: 170 VEVFKYSKHCRVCDKC 185


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,364,662
Number of Sequences: 28952
Number of extensions: 307233
Number of successful extensions: 862
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 860
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)