Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10a13f
(631 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 1.7
SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pomb... 27 2.2
SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr 1|||... 27 3.0
SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S... 27 3.0
SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|ch... 26 3.9
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic... 26 3.9
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 26 3.9
SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|ch... 25 6.8
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ... 25 9.0
SPAC1142.09 ||SPAC8C9.02|dubious|Schizosaccharomyces pombe|chr 1... 25 9.0
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 27.5 bits (58), Expect = 1.7
Identities = 29/116 (25%), Positives = 49/116 (42%), Gaps = 6/116 (5%)
Frame = +3
Query: 297 PTTKTSPAEKLFSGQVFDRYTPNMLYTDMLLEPA--MWAHNPTMLDDLVNISHFSWSPVG 470
P T P+ F YTP+ + LL+P+ A P+ V+IS S S
Sbjct: 109 PATSQLPSSTSFFSPTSSEYTPSSTESSSLLDPSSVSSAILPSSTSVEVSISSSSLSSSD 168
Query: 471 FIQNNE-SALAILNNVGQVDIIAPKENRWVN---VFNLSPYLSHSLKIQASMSPQS 626
+ ++ S+L+ + Q + + + + + S YLS S + +S SP S
Sbjct: 169 PLTSSTFSSLSSSTSSSQPSVSSTSSSTFSSAAPTSTSSSYLSSSSVVSSSSSPSS 224
>SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1095
Score = 27.1 bits (57), Expect = 2.2
Identities = 15/56 (26%), Positives = 26/56 (46%)
Frame = +3
Query: 171 ESTISWQKNVLAVRHDKGIQMYEFSLNLECIDKNIDCSEIHVPTTKTSPAEKLFSG 338
+ +++ N L V HD+ Y ++ E +++N +PT T AE SG
Sbjct: 995 DKVVTYWINTLPVTHDEDDAPYAYTFLAELMEQNHVAVASQMPTIITILAETFASG 1050
>SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 644
Score = 26.6 bits (56), Expect = 3.0
Identities = 16/58 (27%), Positives = 25/58 (43%)
Frame = -1
Query: 538 GAIISTWPTLFKIAKADSLFCMKPTGDQEKWLMFTKSSSIVGLCAHIAGSKSMSVYNI 365
G I WP L K D +F +GD + + SS+V + S +VY++
Sbjct: 416 GQNIPIWPLLQPERKLDVVFAFDSSGDTSNF--WPNGSSLVATYERVTQRASDAVYDV 471
>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 673
Score = 26.6 bits (56), Expect = 3.0
Identities = 23/76 (30%), Positives = 31/76 (40%), Gaps = 7/76 (9%)
Frame = +3
Query: 378 DMLLEPAMWAHNPTMLDDLVN--ISHFS-WSPVGFIQNNESALAILNNVGQVDIIAPK-- 542
D L M A N L DL IS + WSP G N + L +L N +V +
Sbjct: 59 DELPNCQMLAPNELRLGDLTPSVISRYVVWSPTGLADNYDPLLTVLTNRHRVYFFSSSSR 118
Query: 543 --ENRWVNVFNLSPYL 584
+W V +S +L
Sbjct: 119 VLHQKWTCVAQMSTHL 134
>SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|chr
3|||Manual
Length = 872
Score = 26.2 bits (55), Expect = 3.9
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = -3
Query: 617 AHRCLYFKRMTQIRRKIEHIDPSIFFGSNNINLAYI 510
A+ +Y + T R H DP F SNN+ +I
Sbjct: 276 AYVSMYLAKQTDFVRSFFHFDPYSLFISNNLEEIHI 311
>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1729
Score = 26.2 bits (55), Expect = 3.9
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -3
Query: 392 FQKHVCIQHIWSVPIKHLTREQLFSRTRL 306
F+ V I +W+ I + RE L SRT++
Sbjct: 628 FKPKVLISQVWNAIIISMYREHLISRTQI 656
>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1096
Score = 26.2 bits (55), Expect = 3.9
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +1
Query: 343 CLIGTLQICCIQTCFWNRRCGHITQRC 423
CL T+ +C I CF N HI RC
Sbjct: 1042 CLCTTIGLCNIYLCFANE--NHIISRC 1066
>SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 609
Score = 25.4 bits (53), Expect = 6.8
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +3
Query: 363 NMLYTDMLLEPAMWAHNPTMLDDLVNISHFSWSPVGFIQNNESAL 497
N L +L A LD + + HFS S + I+N+E +L
Sbjct: 222 NTLLVSHVLPNISVAQIHNALDGISFVQHFSLSTINLIKNDERSL 266
>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1429
Score = 25.0 bits (52), Expect = 9.0
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +3
Query: 435 VNISHFSWSPVGFIQNNESALAILNNVGQVDIIAPKENRWVNV 563
++I F W+PV ++ + I N VG + + K N VNV
Sbjct: 731 IDIESF-WTPVDVVEEKSAKTYIDNLVGVMRLSVIKANDLVNV 772
>SPAC1142.09 ||SPAC8C9.02|dubious|Schizosaccharomyces pombe|chr
1|||Manual
Length = 115
Score = 25.0 bits (52), Expect = 9.0
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = -3
Query: 185 RYRRFLYFINCY*ASMNFKKYILIHFL 105
+YR+ +YF +C+ ++ N K I++ L
Sbjct: 26 QYRKHIYFNDCFYSTFNKTKTIIVVIL 52
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,669,172
Number of Sequences: 5004
Number of extensions: 57328
Number of successful extensions: 157
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -