Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10a13f
         (631 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0036 - 12600621-12601070                                         28   7.0  
07_01_0389 - 2915191-2915604,2915696-2915752,2915867-2915922,291...    28   7.0  

>12_02_0036 - 12600621-12601070
          Length = 149

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +1

Query: 331 SLVKCLIGTLQICCIQTCFWN 393
           +L  CL+G   +CC   CF N
Sbjct: 53  ALTACLVGACALCCFLLCFSN 73


>07_01_0389 - 2915191-2915604,2915696-2915752,2915867-2915922,
            2916053-2916113,2916243-2916365,2916505-2916537,
            2916617-2916709,2916839-2916934,2917025-2917203,
            2917344-2917530,2918051-2918184,2918311-2918518,
            2918598-2918633,2918785-2919241,2919633-2919736,
            2920489-2920569,2920646-2920697,2920837-2920876,
            2920991-2921085,2921241-2921383,2921899-2922006,
            2922120-2922221,2922302-2922348,2922425-2922554,
            2923173-2923304,2923404-2923616,2923709-2923963,
            2924053-2924799
          Length = 1460

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 13/42 (30%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +1

Query: 277  TVQKFMYQLQRRVLLKSCSLVKCL-IGTLQICCIQTCFWNRR 399
            ++++F++Q+  + LL +CS  +   +GT  +C    C W RR
Sbjct: 1340 SLERFVFQV--KALLHNCSTEETFWMGTYILCTPNFCSWQRR 1379


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,382,136
Number of Sequences: 37544
Number of extensions: 306064
Number of successful extensions: 636
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)