Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10a13f
         (631 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    25   0.46 
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    25   0.46 
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    23   2.4  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   2.4  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   2.4  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   2.4  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    22   5.7  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   5.7  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   7.5  
AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.            21   9.9  

>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 25.4 bits (53), Expect = 0.46
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 390 EPAMWAHNPTMLDDLVNISHFSWSPVGF 473
           +P +  +NP +LDD+ N+  F W   GF
Sbjct: 191 QPDLNYYNPVVLDDMQNVLRF-WLRRGF 217


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 25.4 bits (53), Expect = 0.46
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 390 EPAMWAHNPTMLDDLVNISHFSWSPVGF 473
           +P +  +NP +LDD+ N+  F W   GF
Sbjct: 191 QPDLNYYNPVVLDDMQNVLRF-WLRRGF 217


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
 Frame = +3

Query: 201 LAVRHDKGIQMYEFSLNLECIDKNIDCSEIHVPTTKTSPAEKLFS---GQVF 347
           L V ++K + +  FSL L  I + +    +  PT  +S  E +     GQVF
Sbjct: 306 LMVFYEKSLALAAFSLMLTSILRYLQELHVDAPTWISSVTESVLKSKIGQVF 357


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -1

Query: 568 LNTLTHLFSLGAIISTW 518
           L  L+ LFS G ++ TW
Sbjct: 185 LRALSSLFSKGCLVGTW 201


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -1

Query: 568 LNTLTHLFSLGAIISTW 518
           L  L+ LFS G ++ TW
Sbjct: 185 LRALSSLFSKGCLVGTW 201


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -1

Query: 568 LNTLTHLFSLGAIISTW 518
           L  L+ LFS G ++ TW
Sbjct: 185 LRALSSLFSKGCLVGTW 201


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +3

Query: 189 QKNVLAVRHDKGIQMYEFSLNLECIDKNIDCSEIHVPTTKTSP 317
           Q +V   +  K I++Y  + NLE  + NID  +  + +   +P
Sbjct: 81  QGSVTLRQEYKNIKLYGLTKNLEIKNYNIDWDKCILSSESYNP 123


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = +3

Query: 180 ISWQKNVLAVRHDKGIQMYEFSLNLECIDKNIDCSE 287
           + W KN  A+ HD+  +        + I KN+D ++
Sbjct: 433 VQWLKNDEALNHDQPDKYDLIGNGTKLIIKNVDYAD 468


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = +3

Query: 456 WSPVGFIQNNESALAILNNVGQV 524
           W+P  ++ N  S+    NNV  V
Sbjct: 98  WTPTVYVSNEPSSAITGNNVKDV 120


>AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.
          Length = 122

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 7/33 (21%), Positives = 19/33 (57%)
 Frame = +3

Query: 180 ISWQKNVLAVRHDKGIQMYEFSLNLECIDKNID 278
           I+W K+ + + H K  Q++E+ +  + +   ++
Sbjct: 54  ITWLKDGIELYHHKFFQVHEWPVGNDTLKSKME 86


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,395
Number of Sequences: 438
Number of extensions: 3923
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18826962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)