Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10a13f
         (631 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g39010.1 68417.m05526 glycosyl hydrolase family 9 protein end...    34   0.089
At5g27730.1 68418.m03326 expressed protein                             29   1.9  
At3g13790.1 68416.m01742 beta-fructosidase (BFRUCT1) / beta-fruc...    29   2.5  
At5g10370.1 68418.m01203 helicase domain-containing protein / IB...    29   3.4  
At2g31250.1 68415.m03816 glutamyl-tRNA reductase, putative simil...    29   3.4  
At4g33720.1 68417.m04788 pathogenesis-related protein, putative ...    28   5.9  
At4g12750.1 68417.m02002 expressed protein                             28   5.9  
At4g26800.1 68417.m03860 pentatricopeptide (PPR) repeat-containi...    27   7.8  
At4g26560.1 68417.m03828 calcineurin B-like protein, putative si...    27   7.8  
At4g18600.1 68417.m02755 expressed protein                             27   7.8  

>At4g39010.1 68417.m05526 glycosyl hydrolase family 9 protein
           endo-1,4-beta-glucanase precursor - Fragariax ananassa,
           PID:g3549291
          Length = 497

 Score = 33.9 bits (74), Expect = 0.089
 Identities = 22/85 (25%), Positives = 37/85 (43%)
 Frame = +3

Query: 372 YTDMLLEPAMWAHNPTMLDDLVNISHFSWSPVGFIQNNESALAILNNVGQVDIIAPKENR 551
           + D LL  A W    T  +  +N    +  P G   +N       N VG ++++  KE  
Sbjct: 240 FQDELLWGAAWLRKATGDESYLNYIESNREPFG-ANDNVDEFGWDNKVGGLNVLVSKEVI 298

Query: 552 WVNVFNLSPYLSHSLKIQASMSPQS 626
             N++NL  Y + +     S+ P+S
Sbjct: 299 EGNMYNLEAYKASAESFMCSLVPES 323


>At5g27730.1 68418.m03326 expressed protein
          Length = 472

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 13/47 (27%), Positives = 26/47 (55%)
 Frame = -2

Query: 258 ILN*VRIHTFVFLYHDERLARFFATISSIPLFY*LLLSVYEFQKVYF 118
           ++N +R H F+ ++H  R+      I +  LF+ L+  V+   K+Y+
Sbjct: 424 LINWIREHVFIRVWHSRRVGVLMYVIFAEILFWGLVTGVFHRFKIYW 470


>At3g13790.1 68416.m01742 beta-fructosidase (BFRUCT1) /
           beta-fructofuranosidase / cell wall invertase identical
           to beta-fructofuranosidase GI:402740 from [Arabidopsis
           thaliana]
          Length = 584

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +3

Query: 132 EIHRRSITINKIEESTISWQKNVLAVRHDKGIQMYE 239
           +IHRR + I    +  + W+K+   + +D G  M+E
Sbjct: 211 KIHRRGLAITYTSKDFLKWEKSPEPLHYDDGSGMWE 246


>At5g10370.1 68418.m01203 helicase domain-containing protein / IBR
            domain-containing protein / zinc finger protein-related
            similar to RNA-dependent ATPase/helicase Cdc28p
            [Schizosaccharomyces pombe] GI:1439562; contains Pfam
            profiles PF04408: Helicase associated domain (HA2),
            PF00271: Helicase conserved C-terminal domain, weak hit
            to PF00097: Zinc finger, C3HC4 type (RING finger),
            PF01485: IBR domain
          Length = 1775

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = +1

Query: 523  LILLLPKKIDGSMCSIFR 576
            L+  L KKIDGS+CSI++
Sbjct: 1085 LLTFLEKKIDGSICSIYK 1102


>At2g31250.1 68415.m03816 glutamyl-tRNA reductase, putative similar
           to HEMA2 [SP|P49294], HEMA1 [SP|P42804]
          Length = 524

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 23/109 (21%), Positives = 50/109 (45%), Gaps = 4/109 (3%)
 Frame = +3

Query: 297 PTTKTSPAEKLFSGQVFDRYTPNMLYTDMLLEPAMWAHNPTMLDDLVNISHFSWSPVGFI 476
           P++ +SP +KL +    DRYT     + +++    +  +P  + + + I    W P+   
Sbjct: 57  PSSDSSPLDKLKNSPAIDRYTRER--SSIVVIGLSFHTSPLEMRERLAIPEAEW-PLAIT 113

Query: 477 Q----NNESALAILNNVGQVDIIAPKENRWVNVFNLSPYLSHSLKIQAS 611
           Q    N+    A+L+   +++I     +R+  V  ++ ++S    I  S
Sbjct: 114 QLCALNHIEEAAVLSTCNRIEIYVSALSRYRGVKEVTEWMSKRSGIPVS 162


>At4g33720.1 68417.m04788 pathogenesis-related protein, putative
           similar to SP|P33154 Pathogenesis-related protein 1
           precursor (PR-1) {Arabidopsis thaliana}; contains Pfam
           profile PF00188: SCP-like extracellular protein
          Length = 163

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +1

Query: 379 TCFWNRRCGHITQ 417
           TC W+++CGH TQ
Sbjct: 112 TCAWDKQCGHYTQ 124


>At4g12750.1 68417.m02002 expressed protein 
          Length = 1108

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 13/29 (44%), Positives = 21/29 (72%)
 Frame = -1

Query: 430 SSSIVGLCAHIAGSKSMSVYNIFGVYLSN 344
           SSSIVG  A +AG+++ +V+ +  VYL +
Sbjct: 723 SSSIVGAFAKLAGNRANNVHPMQSVYLGS 751


>At4g26800.1 68417.m03860 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 369

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = -1

Query: 553 HLFSLGAIISTWPTLFKIAKADSLFCMKPTGDQEKWLMFTKSSSIVGLCAH 401
           ++ +  A+I  +    K++K DS++ M      +   +FT SS I GLC H
Sbjct: 117 NVITFSALIDAYAKRGKLSKVDSVYKMMIQMSIDP-NVFTYSSLIYGLCMH 166


>At4g26560.1 68417.m03828 calcineurin B-like protein, putative
           similar to calcineurin B-like protein 3 [Arabidopsis
           thaliana] GI:3309086, calcineurin B-like protein 2
           [Arabidopsis thaliana] GI:3309084; contains
           INTERPRO:IPR002048 calcium-binding EF-hand domain
          Length = 214

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 5/79 (6%)
 Frame = +3

Query: 258 CIDKNIDCSEIHVPTTKTSPAEKLFSGQVFDRYTPN---MLYTDMLLEPAMWAHNPTMLD 428
           C    ++  + HV   +T   E LFS +VFD +  N   +L  +         H    +D
Sbjct: 50  CYYGEMNKEQFHVAIFQTDKNESLFSERVFDLFDTNHDGLLGFEEFARALSVFHPSAPID 109

Query: 429 DLVNISH--FSWSPVGFIQ 479
           D +++S   +     GFI+
Sbjct: 110 DKIDLSFQLYDLKQQGFIE 128


>At4g18600.1 68417.m02755 expressed protein
          Length = 1907

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = +3

Query: 237  EFSLNLECIDKNIDCSEIHVPTTKTSPAEKLFSGQVF 347
            E SLN    D+ I  SE    TT+T P  K F  + F
Sbjct: 1258 ENSLNEAVFDEKIPGSEASTSTTETGPHNKTFPEEPF 1294


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,181,694
Number of Sequences: 28952
Number of extensions: 270199
Number of successful extensions: 639
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 639
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1285411824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)