Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10a11r
(726 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1656 + 38946922-38947542,38947640-38947739,38948045-389481... 33 0.17
02_05_0931 - 32812944-32813363,32814296-32814364,32814466-328145... 30 1.6
05_02_0004 - 5528713-5528718,5529039-5529390,5529802-5530339,553... 30 2.2
11_01_0361 + 2772193-2772334,2773457-2773587,2773872-2773985,277... 29 2.8
08_01_0087 + 630355-630403,630502-630699,631858-631943,632238-63... 29 2.8
06_03_1368 - 29612463-29612638,29613135-29613222,29613334-296134... 29 5.0
03_03_0181 + 15162681-15162806,15164026-15164172,15164269-151643... 29 5.0
11_06_0021 + 19314211-19314311,19315202-19315307,19317135-193174... 28 6.6
05_05_0317 + 24039343-24042717 28 6.6
04_04_1032 - 30259180-30260519,30260650-30260720,30261099-302621... 28 8.7
03_05_0351 - 23382786-23382821,23383373-23383634,23384369-233856... 28 8.7
>01_06_1656 +
38946922-38947542,38947640-38947739,38948045-38948189,
38948868-38948991,38949443-38949960,38950111-38950458,
38950557-38950638,38951309-38951707,38951790-38951927,
38952063-38952108,38952200-38952369
Length = 896
Score = 33.5 bits (73), Expect = 0.17
Identities = 17/57 (29%), Positives = 28/57 (49%)
Frame = -1
Query: 597 EDLKMRNSSNYQQEKLPSNYKTSRRESATKHKLECSKKETSKKFQSKRTKLNTETEE 427
E+ +MR QQE+ K +E A K + ++E ++K Q +R K ET +
Sbjct: 351 EEARMRKQQKKQQEEALREQKRREKEEAEMKKQQRKQEEEAQKEQKRREKEEAETRK 407
>02_05_0931 -
32812944-32813363,32814296-32814364,32814466-32814572,
32816676-32816718
Length = 212
Score = 30.3 bits (65), Expect = 1.6
Identities = 19/84 (22%), Positives = 36/84 (42%)
Frame = -1
Query: 660 PGDFIDYNQPTECHNYTSHKYEDLKMRNSSNYQQEKLPSNYKTSRRESATKHKLECSKKE 481
P IDY QP C S+ Y D ++Y +P +++ R + + + +
Sbjct: 40 PSQNIDYGQPMAC---ISYPYNDSGSGVWASYSSRSVPYLHESRHRHAMKRARGTGGRFL 96
Query: 480 TSKKFQSKRTKLNTETEEWNDSSH 409
+K+ Q ++ T T+ DS +
Sbjct: 97 NTKQLQLQQQSHTTSTKTTTDSQN 120
>05_02_0004 -
5528713-5528718,5529039-5529390,5529802-5530339,
5530354-5531731,5531895-5532015,5534226-5534545
Length = 904
Score = 29.9 bits (64), Expect = 2.2
Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Frame = -1
Query: 558 EKLPSNYKTS-RRESATKHKLECSKKETSKKFQSKRTKLNTETEEWNDSSHLLWQNRNSN 382
+K SNY+ RRES ++C K + T+E N L W +RNS
Sbjct: 498 KKAMSNYRDFVRRESGKNDMMQCLDFFEKKISEDPLFYFRFRTDENNVVKSLFWSDRNSR 557
Query: 381 K 379
K
Sbjct: 558 K 558
>11_01_0361 +
2772193-2772334,2773457-2773587,2773872-2773985,
2774303-2774459,2774577-2775000,2775238-2776030,
2776182-2776241,2776952-2777593
Length = 820
Score = 29.5 bits (63), Expect = 2.8
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Frame = -1
Query: 720 SNFMQNSGNLMTGNYASGPFPGDFIDYNQPTECH--NYTSHKYEDLKMRNSSNYQQEKLP 547
+N +NS TG+ S P F++ N + H YT+HK + + N SN
Sbjct: 267 NNLSENSKGTATGHAES--CPSHFVEINLEKQHHLNGYTNHKLNEKDIFNHSN---SSAF 321
Query: 546 SNYKTSRRESATK 508
S Y R ES+ +
Sbjct: 322 SRYGNKRIESSAQ 334
>08_01_0087 +
630355-630403,630502-630699,631858-631943,632238-632946,
633029-633194,633459-633934,634023-634873,635078-635987,
636597-636784
Length = 1210
Score = 29.5 bits (63), Expect = 2.8
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = -1
Query: 489 KKETSKKFQSKRTKLNTETEEWNDSSHLLWQNRNSNKRHANLMPEELPFT 340
K+ +KK + KR + E + N S + + S H N+ P LPFT
Sbjct: 53 KEARNKKAREKRRQKKEECQGGNQSGAAV---KESEASHLNITPRRLPFT 99
>06_03_1368 -
29612463-29612638,29613135-29613222,29613334-29613474,
29613561-29613595,29613990-29614054,29614286-29614335,
29614417-29614521,29614608-29614688,29614771-29614852,
29614941-29614995,29615111-29616164,29617202-29617289,
29617379-29617485,29617568-29617686,29617784-29617994
Length = 818
Score = 28.7 bits (61), Expect = 5.0
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +1
Query: 37 IIVRNNFINTS*KYLTSLYAVRMXXXXXXXSNFVFSRLSRLDLHGYF 177
+ RNN NT KY SLY + S+ V+ +L ++ G F
Sbjct: 560 VFFRNNHFNTMFKYNGSLYLLATDQGFFSQSDLVWQKLDEVNGDGVF 606
>03_03_0181 +
15162681-15162806,15164026-15164172,15164269-15164355,
15165659-15165793,15165883-15165987,15166079-15166170,
15166259-15166364,15166463-15166549,15166653-15167084
Length = 438
Score = 28.7 bits (61), Expect = 5.0
Identities = 20/78 (25%), Positives = 35/78 (44%)
Frame = -1
Query: 633 PTECHNYTSHKYEDLKMRNSSNYQQEKLPSNYKTSRRESATKHKLECSKKETSKKFQSKR 454
P E NY+ ++Y ++++R NY+ +P R+ K + +K+T F
Sbjct: 57 PWERLNYSRNQYREMRLRQYKNYENLTMP-------RDGLEKECKQVERKDTFYDFH-LN 108
Query: 453 TKLNTETEEWNDSSHLLW 400
T+L T +LLW
Sbjct: 109 TRLVKSTIVHFQLRNLLW 126
>11_06_0021 +
19314211-19314311,19315202-19315307,19317135-19317412,
19318587-19318692,19318812-19319159,19319237-19319313,
19319392-19319516,19319884-19320135,19320314-19320336
Length = 471
Score = 28.3 bits (60), Expect = 6.6
Identities = 23/62 (37%), Positives = 31/62 (50%)
Frame = -1
Query: 600 YEDLKMRNSSNYQQEKLPSNYKTSRRESATKHKLECSKKETSKKFQSKRTKLNTETEEWN 421
Y+ N QE KTS+ ES HK S ++TSK SKR + +++T E N
Sbjct: 187 YKSFISTELDNILQEPANGTKKTSKTES---HK--DSGQKTSKN--SKRARQDSDTSEIN 239
Query: 420 DS 415
DS
Sbjct: 240 DS 241
>05_05_0317 + 24039343-24042717
Length = 1124
Score = 28.3 bits (60), Expect = 6.6
Identities = 16/73 (21%), Positives = 29/73 (39%)
Frame = -1
Query: 597 EDLKMRNSSNYQQEKLPSNYKTSRRESATKHKLECSKKETSKKFQSKRTKLNTETEEWND 418
E+ + N Y+ +L + R + S +E + SK+T++ W+D
Sbjct: 671 EEFVVHNDKGYKISELKTMMSIGGRICIKNLEAVDSAEEAGEALLSKKTRIRILDLVWSD 730
Query: 417 SSHLLWQNRNSNK 379
HL + N K
Sbjct: 731 RRHLTSEEANQEK 743
>04_04_1032 -
30259180-30260519,30260650-30260720,30261099-30262118,
30263886-30264121
Length = 888
Score = 27.9 bits (59), Expect = 8.7
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -1
Query: 537 KTSRRESATKHKLECSKKETSKKFQSK 457
K +RRE A H LE +K+ + K+Q++
Sbjct: 118 KYARREDAILHALELERKQLASKYQNQ 144
>03_05_0351 -
23382786-23382821,23383373-23383634,23384369-23385675,
23385776-23386290,23386379-23386741,23386916-23387284,
23387365-23388057,23388152-23388238,23388354-23388612
Length = 1296
Score = 27.9 bits (59), Expect = 8.7
Identities = 26/92 (28%), Positives = 33/92 (35%)
Frame = -1
Query: 615 YTSHKYEDLKMRNSSNYQQEKLPSNYKTSRRESATKHKLECSKKETSKKFQSKRTKLNTE 436
Y S E RN + ++ K +SAT + K L T
Sbjct: 48 YASLTQEQKDERNKKDRERRKRKEEESQVLNKSATNSGVA----PLGKLSNISAADLMTC 103
Query: 435 TEEWNDSSHLLWQNRNSNKRHANLMPEELPFT 340
E NDSS L S+ H N+ P LPFT
Sbjct: 104 QLEVNDSSTL--HKERSDASHLNITPRRLPFT 133
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,825,709
Number of Sequences: 37544
Number of extensions: 348596
Number of successful extensions: 885
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 884
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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