Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10a11f
         (661 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3 |Schizos...    30   0.26 
SPAC23C11.05 |||inorganic pyrophosphatase |Schizosaccharomyces p...    27   2.4  
SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr 2|...    27   3.2  
SPAC4H3.12c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   7.3  
SPAC1705.03c ||SPAC23H4.19|conserved fungal family|Schizosacchar...    25   9.7  
SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces pombe|...    25   9.7  
SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces pomb...    25   9.7  

>SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 601

 Score = 30.3 bits (65), Expect = 0.26
 Identities = 18/63 (28%), Positives = 26/63 (41%)
 Frame = +1

Query: 277 FNSTVETGVAQVSHFPPILDYTENTYQQQFPGTNLYNATTNTISNSFYSNFMQNSGNLMT 456
           +N T    V+  S   P  D   +T      G+  Y ++ N   N +Y N  Q  G  M+
Sbjct: 353 YNYTTNYSVSSPSVTNPFFDVGSSTQNASLMGSTGYPSSAN---NVYYENSYQGVGTSMS 409

Query: 457 GNY 465
            NY
Sbjct: 410 DNY 412


>SPAC23C11.05 |||inorganic pyrophosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 289

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +1

Query: 7   ENRKNAAARIENQLPQHGYGFNDHKIVNSYENNNMVSYTQTK 132
           + +K     + N  P HGY +N      +YE+ N+V + +TK
Sbjct: 73  DTKKGKLRFVRNCFPHHGYIWNYGAFPQTYEDPNVV-HPETK 113


>SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 554

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 15/55 (27%), Positives = 22/55 (40%)
 Frame = +1

Query: 463 YASGPFPGDFIDYNQPTECHNYTSHKYEDLKMRNSSNYQQEKLPSNYKTSRRESA 627
           Y  G      + +  P   HN+    ++ LK   SSNY  EKL    K   +  +
Sbjct: 155 YEPGTRENPAVPFLPPLYTHNHDPVDHKSLKNFYSSNYFAEKLIDQLKNREKSQS 209


>SPAC4H3.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 101

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -1

Query: 181 NNCFFVICFFHFCLPWVLFVYTIPCYY 101
           NN F V CF    L  +LF+ TI C +
Sbjct: 17  NNNFQVSCFNPILLKIILFLNTIVCIF 43


>SPAC1705.03c ||SPAC23H4.19|conserved fungal
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +1

Query: 373 TNLYNATTNTISNSFYSNFMQNSGNLMTGN 462
           +N+  AT + ISN F  N    +GNL   N
Sbjct: 202 SNVTTATFDGISNVFIGNLKSAAGNLYFSN 231


>SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 700

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 13  RKNAAARIENQLPQHGYGFNDH 78
           R+NA+ R+  +L   GYG  DH
Sbjct: 35  RQNASLRVGPELEVTGYGCEDH 56


>SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 262

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +1

Query: 235 SSAKYMPSSQKYNEFNSTVETGVAQVS 315
           SSA    SS  Y  ++  V  GVAQ+S
Sbjct: 222 SSAAGNSSSSSYTSYSGAVSNGVAQLS 248


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.309    0.124    0.358 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,582,983
Number of Sequences: 5004
Number of extensions: 52203
Number of successful extensions: 136
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)