Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10a11f
(661 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0080 - 19529575-19529643,19529756-19529938,19530061-195302... 30 1.4
01_01_0426 + 3234987-3235935,3236744-3236782,3237044-3237409,324... 30 1.9
11_01_0361 + 2772193-2772334,2773457-2773587,2773872-2773985,277... 29 2.5
02_03_0378 + 18327622-18329826 29 2.5
01_01_0419 - 3146851-3147339,3148428-3148663,3148847-3149793,315... 29 2.5
06_03_0913 + 25913231-25913609,25913702-25913775,25914400-259145... 29 3.3
04_04_0881 + 29055724-29059197 28 7.6
01_06_1123 + 34671365-34671883,34672366-34672625,34673045-346731... 28 7.6
>02_04_0080 -
19529575-19529643,19529756-19529938,19530061-19530210,
19530297-19530379,19530497-19530599,19530709-19530918,
19531023-19531183,19531275-19531351,19531483-19531610,
19531695-19531935,19532047-19532180,19532261-19532435,
19532587-19532656,19532746-19532803,19532887-19532994,
19533088-19533283,19533381-19533727,19534008-19534034,
19534334-19534336
Length = 840
Score = 30.3 bits (65), Expect = 1.4
Identities = 16/51 (31%), Positives = 23/51 (45%)
Frame = +1
Query: 253 PSSQKYNEFNSTVETGVAQVSHFPPILDYTENTYQQQFPGTNLYNATTNTI 405
P SQ Y + ++ V + IL Y E TY+ G +Y+AT I
Sbjct: 604 PLSQCYKKLGCSINRVVEDSEDYKMILKYLEKTYEPVKVGDVVYSATVERI 654
>01_01_0426 +
3234987-3235935,3236744-3236782,3237044-3237409,
3240871-3242315
Length = 932
Score = 29.9 bits (64), Expect = 1.9
Identities = 21/85 (24%), Positives = 38/85 (44%)
Frame = +1
Query: 208 SCNQKIQDISSAKYMPSSQKYNEFNSTVETGVAQVSHFPPILDYTENTYQQQFPGTNLYN 387
S + + S K + S + E N V A++S ILD ++N+++ QFP +
Sbjct: 48 SIHSSFSRLRSLKIIDLSVNW-ELNGKVPEFFAEISSLS-ILDISDNSFEGQFPTKIFHL 105
Query: 388 ATTNTISNSFYSNFMQNSGNLMTGN 462
+ T+ S ++ N + GN
Sbjct: 106 KSLRTLDLSMNTDLSINLPEFLDGN 130
>11_01_0361 +
2772193-2772334,2773457-2773587,2773872-2773985,
2774303-2774459,2774577-2775000,2775238-2776030,
2776182-2776241,2776952-2777593
Length = 820
Score = 29.5 bits (63), Expect = 2.5
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Frame = +1
Query: 421 SNFMQNSGNLMTGNYASGPFPGDFIDYNQPTECH--NYTSHKYEDLKMRNSSNYQQEKLP 594
+N +NS TG+ S P F++ N + H YT+HK + + N SN
Sbjct: 267 NNLSENSKGTATGHAES--CPSHFVEINLEKQHHLNGYTNHKLNEKDIFNHSN---SSAF 321
Query: 595 SNYKTSRRESATK 633
S Y R ES+ +
Sbjct: 322 SRYGNKRIESSAQ 334
>02_03_0378 + 18327622-18329826
Length = 734
Score = 29.5 bits (63), Expect = 2.5
Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
Frame = +1
Query: 190 ALLRGGSCNQKIQDIS-SAKYMPSSQKYNEFNSTVETGVAQVSHFPPILDYTENTYQQQF 366
A+ G CN S S K + K++ +++ +GV H + T TY Q
Sbjct: 223 AVETGYPCNGTSSSFSWSTKQQQQNHKHSYSSASRTSGVPGTGHGVYQQENTYETYNNQS 282
Query: 367 PGTNLYNATTNTISNSFYSN 426
N Y+ T N+ + YS+
Sbjct: 283 FQWNQYSKTNNSAGTNAYSS 302
>01_01_0419 -
3146851-3147339,3148428-3148663,3148847-3149793,
3150258-3150356,3151128-3151501
Length = 714
Score = 29.5 bits (63), Expect = 2.5
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = +1
Query: 265 KYNEFNSTVETGVAQVSHFPPILDYTENTYQQQFPGTNLYNATTNTISNSFYSN 426
+YN+ V A + HF +LD +N + FP L N T+ S+ +N
Sbjct: 317 QYNDLYGPVPDSFADL-HFLRVLDLADNDLEGLFPKRILQNRNLTTVHISYNTN 369
>06_03_0913 +
25913231-25913609,25913702-25913775,25914400-25914540,
25914834-25914946,25915359-25915491,25916213-25916351,
25916428-25916527,25916906-25916963,25917122-25917199,
25917278-25917376,25917657-25917735,25917826-25917974,
25918529-25918834,25918994-25919032
Length = 628
Score = 29.1 bits (62), Expect = 3.3
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Frame = +1
Query: 385 NATTNTISNSFYSNFMQNSGNLMTGNYASGPFPG--DFI--DYNQPTECHNYTSHKYEDL 552
N TTN ++NS ++++ G + G +F+ YN+ E ++TSH E++
Sbjct: 518 NITTNEMANSMRYSYLRGPGGRFRNPFDHGARKNCSEFLLNGYNEDIERLDHTSHTDEEM 577
Query: 553 KMRNSSN 573
M +N
Sbjct: 578 GMIQMTN 584
>04_04_0881 + 29055724-29059197
Length = 1157
Score = 27.9 bits (59), Expect = 7.6
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
Frame = +1
Query: 397 NTISNSFYSNFMQNSGNLMT----GNYASGPFPGDF 492
N++S +F+ NS NL T GN SGP P F
Sbjct: 136 NSLSGPIPQSFLANSTNLQTFDVSGNLLSGPVPVSF 171
>01_06_1123 +
34671365-34671883,34672366-34672625,34673045-34673143,
34673237-34675178,34675588-34675658,34676158-34676307,
34676963-34677038,34677131-34677232,34677707-34677855,
34678214-34678364
Length = 1172
Score = 27.9 bits (59), Expect = 7.6
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Frame = +1
Query: 382 YNATTNTISNSFYSN---FMQNSGNLMTGNYASGPFPGDFIDYNQPTECHNYTSH 537
YN+ + SNS Y++ + NS N +G+Y+ G ++P + Y+S+
Sbjct: 793 YNSNSAWSSNSSYNSNSAWSNNSNNSWSGSYSDNGGTGSGSSASRPNQTAGYSSY 847
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.309 0.124 0.358
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,986,104
Number of Sequences: 37544
Number of extensions: 297207
Number of successful extensions: 629
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 629
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
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