Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10a11f
         (661 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48717-10|CAA88612.2|  423|Caenorhabditis elegans Hypothetical p...    30   1.3  
Z48584-9|CAA88478.2|  423|Caenorhabditis elegans Hypothetical pr...    30   1.3  
Z66520-8|CAE17837.1|  357|Caenorhabditis elegans Hypothetical pr...    30   1.7  
Z92827-4|CAB07323.1|  722|Caenorhabditis elegans Hypothetical pr...    29   2.9  
U41110-1|AAA82415.1|  506|Caenorhabditis elegans Hypothetical pr...    29   3.9  
Z73970-3|CAA98242.2|  773|Caenorhabditis elegans Hypothetical pr...    28   6.8  
Z69661-2|CAA93494.1|  925|Caenorhabditis elegans Hypothetical pr...    28   6.8  
AF039053-3|AAC25880.2|  349|Caenorhabditis elegans Hypothetical ...    28   6.8  
AF016686-15|AAB66231.3|  572|Caenorhabditis elegans C-type lecti...    28   6.8  
Z82287-2|CAB05312.1|  502|Caenorhabditis elegans Hypothetical pr...    27   8.9  

>Z48717-10|CAA88612.2|  423|Caenorhabditis elegans Hypothetical
           protein ZK1321.4 protein.
          Length = 423

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +1

Query: 370 GTNLYNAT-TNTISNSFYSNFMQNSGNLMTGNYASGPF 480
           G N  N T TNT S++  S+   +S +  +GNY SG F
Sbjct: 147 GVNQRNITNTNTSSSNHQSSTFHSSSHQSSGNYGSGGF 184


>Z48584-9|CAA88478.2|  423|Caenorhabditis elegans Hypothetical
           protein ZK1321.4 protein.
          Length = 423

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +1

Query: 370 GTNLYNAT-TNTISNSFYSNFMQNSGNLMTGNYASGPF 480
           G N  N T TNT S++  S+   +S +  +GNY SG F
Sbjct: 147 GVNQRNITNTNTSSSNHQSSTFHSSSHQSSGNYGSGGF 184


>Z66520-8|CAE17837.1|  357|Caenorhabditis elegans Hypothetical
           protein F49E12.12 protein.
          Length = 357

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 6/39 (15%)
 Frame = -1

Query: 169 FVICFFHFCLP-----WVLFVYTIPC-YYSRKNSLFCDH 71
           F I  F FCLP     ++ F+YT PC Y++   +  C++
Sbjct: 245 FCIALFAFCLPVVCKDYISFLYTYPCLYHTEWPAAICEY 283


>Z92827-4|CAB07323.1|  722|Caenorhabditis elegans Hypothetical
           protein C29F7.5 protein.
          Length = 722

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
 Frame = +1

Query: 247 YMPSSQKYNEFN-STVETGVAQVSHFPPILDYTENTYQQQFPGTNLYNATTNTISNSFYS 423
           Y P++Q  N    S ++   +Q S +     + E  + +Q P TN+Y+ + +T     Y 
Sbjct: 310 YFPANQYVNAGQYSPLQQSFSQNSQYDLFDGFAEFGFLEQVPATNMYSGSQSTQMEQNYL 369

Query: 424 NFMQNS 441
             + NS
Sbjct: 370 PNVNNS 375


>U41110-1|AAA82415.1|  506|Caenorhabditis elegans Hypothetical
           protein ZK682.2 protein.
          Length = 506

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -1

Query: 169 FVICFFHFCLPWVLFVYTIPCYYSRKNS 86
           + +C    C+ W + VY  PC+  +K S
Sbjct: 222 YAVCGIVMCIIWYMMVYDSPCHADKKLS 249


>Z73970-3|CAA98242.2|  773|Caenorhabditis elegans Hypothetical
           protein C29A12.3a protein.
          Length = 773

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +1

Query: 529 TSHKYEDLKMRNSSNYQQEKLPSNYKTSRRESATKHKLECSKK 657
           T    +D+K+ + S  +++KLPS+   S  E++T  K    K+
Sbjct: 721 TKKNEKDVKVESPSPIRKKKLPSDSDESDEETSTNKKQPAKKR 763


>Z69661-2|CAA93494.1|  925|Caenorhabditis elegans Hypothetical
           protein F48F7.4 protein.
          Length = 925

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = +1

Query: 505 QPTECHNYTSHKYEDLKMRNSSNYQQEKLPSNYKTSRRESATKH 636
           QP   +NY+ ++YE+    NSSN Q+    +  + ++     +H
Sbjct: 617 QPRRDNNYSKNRYENNYHNNSSNNQRSPYQAQNQQNQPTQQNQH 660


>AF039053-3|AAC25880.2|  349|Caenorhabditis elegans Hypothetical
           protein C45H4.13 protein.
          Length = 349

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 26/115 (22%), Positives = 48/115 (41%), Gaps = 1/115 (0%)
 Frame = +1

Query: 235 SSAKYMPS-SQKYNEFNSTVETGVAQVSHFPPILDYTENTYQQQFPGTNLYNATTNTISN 411
           SS+ Y  S S  Y+ +  ++ +     S+ P    Y+  +Y         Y++  ++ S 
Sbjct: 242 SSSSYSSSDSSSYSSYTPSISSNSDYTSYSPSYYSYS--SYSPS------YSSYGSSYSP 293

Query: 412 SFYSNFMQNSGNLMTGNYASGPFPGDFIDYNQPTECHNYTSHKYEDLKMRNSSNY 576
           S+YSN+     N    NY  G +  ++   N    C++Y S   +      +S Y
Sbjct: 294 SYYSNYYGGYNNYGYNNYGYG-YNNNYYSGNYYC-CNSYRSCWRQSYSCSGNSYY 346


>AF016686-15|AAB66231.3|  572|Caenorhabditis elegans C-type lectin
           protein 43 protein.
          Length = 572

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
 Frame = +1

Query: 385 NATTNTISNSFYSNFMQNSGNLMTGNY----ASGPFPGDFIDYNQPTE 516
           N T  +   S YSNF+  + NL  GNY     SG   G ++  +Q T+
Sbjct: 109 NWTDYSSDTSSYSNFVAGNPNLDVGNYVYMLVSGSSAGRWVSADQYTQ 156


>Z82287-2|CAB05312.1|  502|Caenorhabditis elegans Hypothetical
           protein ZK550.2 protein.
          Length = 502

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -3

Query: 395 VVALYRLVPGNCCWYVFSV*SKIGGK*DTCATPVSTV 285
           VV  + LVP   C Y++ + S I    +  +TP++TV
Sbjct: 253 VVPKFDLVPALVCIYLYMIVSMIATNIEVMSTPLTTV 289


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.309    0.124    0.358 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,346,754
Number of Sequences: 27780
Number of extensions: 292089
Number of successful extensions: 721
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 719
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)