Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10a11f
         (661 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    23   2.0  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    23   2.0  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    23   3.4  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    23   3.4  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    21   7.9  

>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 10/40 (25%), Positives = 22/40 (55%)
 Frame = +1

Query: 7   ENRKNAAARIENQLPQHGYGFNDHKIVNSYENNNMVSYTQ 126
           E  ++   +I + L  + Y ++++   N+Y NNN  +Y +
Sbjct: 305 ERERSKEPKIISSL-SNNYKYSNYNNYNNYNNNNYNNYNK 343


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 16/69 (23%), Positives = 33/69 (47%), Gaps = 8/69 (11%)
 Frame = +1

Query: 334 DYTENTYQQQFPGTNLYNATTNTIS-NSFYSNF-------MQNSGNLMTGNYASGPFPGD 489
           DYT+ + +++ P ++ +    N +    F+  +       +Q +G+   GN+ +GP PG 
Sbjct: 203 DYTDKSNEKKIPKSSGWRKLRNIVHWTPFFQTYKKQRYPWVQLAGH--QGNFRAGPTPGT 260

Query: 490 FIDYNQPTE 516
            +    P E
Sbjct: 261 ILKKLCPQE 269


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -1

Query: 58  RAGAIGFLFWPRHF 17
           R GA GFL+  +HF
Sbjct: 198 RVGAFGFLYLNKHF 211


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -1

Query: 58  RAGAIGFLFWPRHF 17
           R GA GFL+  +HF
Sbjct: 198 RVGAFGFLYLNKHF 211


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = +1

Query: 376 NLYNATTNTISNSFYSNFMQNSGNLMTGNYASGPFP 483
           N YN   N  +N+ Y+N+ +   N++       P P
Sbjct: 332 NNYNNNYNNYNNNNYNNYKKLYYNIINIEQIPVPVP 367


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.309    0.124    0.358 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,369
Number of Sequences: 438
Number of extensions: 4562
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19855845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)