Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10a11f
(661 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g65910.1 68414.m07479 no apical meristem (NAM) family protein... 31 0.90
At1g65470.1 68414.m07427 chromatin assembly factor-1 (FASCIATA1)... 30 1.6
At1g02110.1 68414.m00137 proline-rich family protein contains pr... 30 1.6
At1g78580.1 68414.m09158 alpha, alpha-trehalose-phosphate syntha... 29 2.1
At2g18800.1 68415.m02188 xyloglucan:xyloglucosyl transferase, pu... 29 2.7
At1g76530.1 68414.m08906 auxin efflux carrier family protein con... 29 2.7
At5g60970.1 68418.m07648 TCP family transcription factor, putati... 29 3.6
At5g50670.1 68418.m06279 squamosa promoter-binding protein, puta... 29 3.6
At5g50570.2 68418.m06264 squamosa promoter-binding protein, puta... 29 3.6
At5g50570.1 68418.m06263 squamosa promoter-binding protein, puta... 29 3.6
At4g09780.1 68417.m01607 meprin and TRAF homology domain-contain... 29 3.6
At3g47100.1 68416.m05114 expressed protein 28 4.8
At5g54230.1 68418.m06755 myb family transcription factor (MYB49)... 28 6.3
At5g27060.1 68418.m03229 disease resistance family protein conta... 27 8.4
At3g63070.1 68416.m07084 PWWP domain-containing protein putative... 27 8.4
At1g45130.1 68414.m05173 beta-galactosidase, putative / lactase,... 27 8.4
>At1g65910.1 68414.m07479 no apical meristem (NAM) family protein
similar to jasmonic acid 2 GI:6175246 from [Lycopersicon
esculentum]; similar to NAC2 (GI:6456751) {Arabidopsis
thaliana}
Length = 631
Score = 30.7 bits (66), Expect = 0.90
Identities = 29/127 (22%), Positives = 51/127 (40%), Gaps = 5/127 (3%)
Frame = +1
Query: 241 AKYMPSSQKYNEFNSTVETGVAQVSHFPPILD-YTENTYQQQFPGTNLYNATTNTISNSF 417
++Y S ++ + +E Q PP+ Y E ++ G N+ N T +S
Sbjct: 245 SQYGTISYPPSKVDIALECARLQNRMLPPVPPLYVEGLTHNEYFGNNVANDTDEMLSKII 304
Query: 418 Y----SNFMQNSGNLMTGNYASGPFPGDFIDYNQPTECHNYTSHKYEDLKMRNSSNYQQE 585
S+ +NS + G ASG F GDF + C + + N+++E
Sbjct: 305 ALAQASHEPRNSLDSWDGGSASGNFHGDFNYSGEKVSCLEANVEAVD--MQEHHVNFKEE 362
Query: 586 KLPSNYK 606
+L N +
Sbjct: 363 RLVENLR 369
>At1g65470.1 68414.m07427 chromatin assembly factor-1 (FASCIATA1)
(FAS1) identical to FAS1 [Arabidopsis thaliana]
GI:4887626
Length = 815
Score = 29.9 bits (64), Expect = 1.6
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +1
Query: 550 LKMRNSSNYQQEKLPSNYKTSRRESATKHKLECSK 654
LK S+ Q KLPS+ T++ S TKH+ E K
Sbjct: 343 LKKSKDSSLTQPKLPSSEVTAQELSCTKHENEIGK 377
>At1g02110.1 68414.m00137 proline-rich family protein contains
proline-rich domain, INTERPRO:IPR000694
Length = 679
Score = 29.9 bits (64), Expect = 1.6
Identities = 26/113 (23%), Positives = 52/113 (46%), Gaps = 2/113 (1%)
Frame = +1
Query: 322 PPILDYTENTYQQQFPGTNLYNATTNTISNSFYSNFMQNSGNLMTGNYASGPFPGDFIDY 501
PPI + T ++ P ++ +++ + SFY QNS + + AS + +
Sbjct: 94 PPIRSKPKPTRPRRLPHILSDSSPSSSPATSFYPTAHQNSTYSRSPSQASSVWNWENFYP 153
Query: 502 NQPTECHNYTSHKYEDLKMRNSSNY--QQEKLPSNYKTSRRESATKHKLECSK 654
P + + ++ K R S+Y + E+ +Y SRR++A ++ CS+
Sbjct: 154 PSPPDSEYFERKARQNHKHRPPSDYDAETERSDHDYCHSRRDAA--EEVHCSE 204
>At1g78580.1 68414.m09158 alpha, alpha-trehalose-phosphate synthase,
UDP-forming, putative / trehalose-6-phosphate synthase,
putative / UDP-glucose-glucosephosphate
glucosyltransferase, putative similar to
trehalose-6-phosphate synthase SL-TPS/P [Selaginella
lepidophylla] GI:4100325; contains Pfam profiles
PF00982: Glycosyltransferase family 20, PF02358:
Trehalose-phosphatase
Length = 942
Score = 29.5 bits (63), Expect = 2.1
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Frame = +3
Query: 291 RNWCSTSVSLPADLRLHGEY----VPTTIPWH*SIQRYNEHNLELFLQQLHAE*RQPHDW 458
+ W T VS D + + VP +P H +IQRY++ N L + +A +P D
Sbjct: 547 QEWAETFVSELNDTVIEAQLRISKVPPELPQHDAIQRYSKSNNRLLILGFNATLTEPVDN 606
Query: 459 ELRK 470
+ R+
Sbjct: 607 QGRR 610
>At2g18800.1 68415.m02188 xyloglucan:xyloglucosyl transferase,
putative / xyloglucan endotransglycosylase, putative /
endo-xyloglucan transferase, putative similar to
xyloglucan endotransglycosylase TCH4 GI:886116 from
[Arabidopsis thaliana]
Length = 305
Score = 29.1 bits (62), Expect = 2.7
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +1
Query: 442 GNLMTGNYASGPFPGDFIDYNQPTEC 519
G L+ N++ GPF F++YN C
Sbjct: 200 GGLVKTNWSQGPFVASFMNYNSENAC 225
>At1g76530.1 68414.m08906 auxin efflux carrier family protein
contains auxin efflux carrier domain, Pfam:PF03547
Length = 415
Score = 29.1 bits (62), Expect = 2.7
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = +1
Query: 502 NQPTECHNYT-SHKYED-LKMRNSSNYQQEKLPSNYKTSRRESATKHKLECSKK 657
N P E H ++ Y+D K++ S+ ++EK N++ R E + + SKK
Sbjct: 189 NSPVETHTHSIESNYDDSCKVQLISSKEEEKEEDNHQVGRWEEVKQRVVSLSKK 242
>At5g60970.1 68418.m07648 TCP family transcription factor, putative
putative basic helix-loop-helix DNA binding protein
TCP2, Arabidopsis thaliana, EMBL:AF072691
Length = 360
Score = 28.7 bits (61), Expect = 3.6
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +1
Query: 352 YQQQFPGTNLYNATTNTISNSFYSNFMQNSGNLMT 456
+QQQFP TN YN T+ + + SGN +T
Sbjct: 215 HQQQFPLTNPYNNTSAYYNLGHLQQSLDQSGNNVT 249
>At5g50670.1 68418.m06279 squamosa promoter-binding protein,
putative similar to squamosa promoter binding
protein-like 9 [Arabidopsis thaliana] GI:5931673;
contains Pfam profile PF03110: SBP domain
Length = 359
Score = 28.7 bits (61), Expect = 3.6
Identities = 15/27 (55%), Positives = 18/27 (66%)
Frame = -2
Query: 303 YTSFYGRIKLVIFLRGWHVFSTTNVLN 223
+T F G KL+ F G HVF TT+VLN
Sbjct: 187 FTGFQGS-KLLEFSGGSHVFPTTSVLN 212
>At5g50570.2 68418.m06264 squamosa promoter-binding protein,
putative similar to squamosa promoter binding
protein-like 9 [Arabidopsis thaliana] GI:5931677;
contains Pfam profile PF03110: SBP domain
Length = 359
Score = 28.7 bits (61), Expect = 3.6
Identities = 15/27 (55%), Positives = 18/27 (66%)
Frame = -2
Query: 303 YTSFYGRIKLVIFLRGWHVFSTTNVLN 223
+T F G KL+ F G HVF TT+VLN
Sbjct: 187 FTGFQGS-KLLEFSGGSHVFPTTSVLN 212
>At5g50570.1 68418.m06263 squamosa promoter-binding protein,
putative similar to squamosa promoter binding
protein-like 9 [Arabidopsis thaliana] GI:5931677;
contains Pfam profile PF03110: SBP domain
Length = 359
Score = 28.7 bits (61), Expect = 3.6
Identities = 15/27 (55%), Positives = 18/27 (66%)
Frame = -2
Query: 303 YTSFYGRIKLVIFLRGWHVFSTTNVLN 223
+T F G KL+ F G HVF TT+VLN
Sbjct: 187 FTGFQGS-KLLEFSGGSHVFPTTSVLN 212
>At4g09780.1 68417.m01607 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein low similarity
to ubiquitin-specific protease 12 [Arabidopsis thaliana]
GI:11993471; contains Pfam profile PF00917: MATH domain
Length = 443
Score = 28.7 bits (61), Expect = 3.6
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = -1
Query: 190 LRLNNCFFVICFFHFCLPWVLFVYTIPCYYSRKNSLFC 77
+ +++ +F IC HFCLP++ Y + K+++FC
Sbjct: 18 IAVSSLYFYICKSHFCLPYI--------YTTLKSTIFC 47
>At3g47100.1 68416.m05114 expressed protein
Length = 116
Score = 28.3 bits (60), Expect = 4.8
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +1
Query: 184 AEALLRGGSCNQKIQDISSAKYMPSSQKYNEFNSTVETGVAQVSHFPP 327
+E L G SC++ ++D S K Y ++N T + +AQV P
Sbjct: 33 SEPSLEGTSCSRLLEDRSLVKREKQLDIYAKWNPTSKNDLAQVQVLKP 80
>At5g54230.1 68418.m06755 myb family transcription factor (MYB49)
contains Pfam profile: PF00249 myb-like DNA-binding
domain
Length = 319
Score = 27.9 bits (59), Expect = 6.3
Identities = 20/97 (20%), Positives = 37/97 (38%), Gaps = 9/97 (9%)
Frame = +1
Query: 223 IQDISSAKYMPSSQKYNEFNSTVETGVAQVSHFPPILDYTENTYQQQF--------PGTN 378
+ ++ + Y P+ Q N+ N+ T ++ PP+ Y + P N
Sbjct: 174 LNNVQTESYQPNQQLQNDLNTDQTTFTGLLNSTPPVQWQNNGEYLGDYHSYTGTGDPSNN 233
Query: 379 LYNATTNTISNSFYSNFMQNSGNLMTG-NYASGPFPG 486
N S +F S+ + + N G N++S G
Sbjct: 234 KVPQAGNYSSAAFVSDHINDGENFKAGWNFSSSMLAG 270
>At5g27060.1 68418.m03229 disease resistance family protein contains
leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; similar to Hcr2-0B [Lycopersicon
esculentum] gi|3894387|gb|AAC78593
Length = 957
Score = 27.5 bits (58), Expect = 8.4
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 7/84 (8%)
Frame = +1
Query: 220 KIQDISSAKYMPSSQKYNEFNSTVETGVA----QVSHFPPILDYTENTYQQQFPGT--NL 381
K +D S+ KYM S Y + + GVA ++ +D++ N ++ + P + L
Sbjct: 730 KNEDQSNEKYMGSGLYYQDSMVLMNKGVAMELVRILTIYTAVDFSGNRFEGEIPKSIGLL 789
Query: 382 YNATTNTISNSFYSNFMQNS-GNL 450
++SN+ +S M +S GNL
Sbjct: 790 KELLVLSLSNNAFSGHMPSSMGNL 813
>At3g63070.1 68416.m07084 PWWP domain-containing protein putative
transcription factor HUA2, Arabidopsis thaliana,
EMBL:AF116556
Length = 1347
Score = 27.5 bits (58), Expect = 8.4
Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
Frame = +1
Query: 367 PGTNLYNATTNTISNSFYSNFMQNSGNLMTGNYASG-PFPGDFIDYNQPTECHNYTSHKY 543
P N A +N+ SN F ++ +N M G+Y +G P + Y P ++
Sbjct: 1135 PSQNAQLAMSNSYSNGF--DYRRNPS--MQGDYHAGPPRMNPPMHYGSPEPSYSSRVSLS 1190
Query: 544 EDLKMRNSSNYQQEKLPSNY 603
+ + SN+Q PS++
Sbjct: 1191 KSMPRGEGSNFQHRPYPSSH 1210
>At1g45130.1 68414.m05173 beta-galactosidase, putative / lactase,
putative similar to beta-galactosidase [Lycopersicon
esculentum] GI:7939619, beta-galactosidase BG1
GI:15081596 from [Vitis vinifera]; contains Pfam profile
PF01301: Glycosyl hydrolases family 35
Length = 732
Score = 27.5 bits (58), Expect = 8.4
Identities = 17/57 (29%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
Frame = +1
Query: 418 YSNFMQNSGNLMTGNYASGPFPGDFIDYNQPTECHNYTSH-KYEDLKMRNSSNYQQE 585
Y N+ G G A GPF DY+ P + + KY LK + + Q E
Sbjct: 291 YINYYMYHGGTNFGRTAGGPFITTSYDYDAPIDEYGLVQEPKYSHLKQLHQAIKQCE 347
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.309 0.124 0.358
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,108,849
Number of Sequences: 28952
Number of extensions: 253320
Number of successful extensions: 606
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 605
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1383534864
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
- SilkBase 1999-2023 -