Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10a10r
         (749 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   3.1  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   4.0  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   5.3  

>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 729 WMSWLIANRRDPGYVPQNSETY 664
           WM  L+  RR P   P+  +TY
Sbjct: 357 WMPRLLMMRRTPYSTPEYDDTY 378


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 8/14 (57%), Positives = 10/14 (71%), Gaps = 1/14 (7%)
 Frame = -3

Query: 516 HHCPFIYNCV-GVR 478
           HHCP IY  + G+R
Sbjct: 474 HHCPEIYKAIEGIR 487


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -3

Query: 603 SRLCHTCRCLRPLRAKHCRICKRC 532
           S L  + R + P  +K+C I K C
Sbjct: 70  SYLAESSRSIDPCASKYCGIGKEC 93



 Score = 21.4 bits (43), Expect = 9.3
 Identities = 7/26 (26%), Positives = 12/26 (46%)
 Frame = -3

Query: 585 CRCLRPLRAKHCRICKRCVAYFDHHC 508
           C C+R    +H  +C      + +HC
Sbjct: 104 CVCMRKCPRRHRPVCASNGKIYANHC 129


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,699
Number of Sequences: 438
Number of extensions: 5258
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)