Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10a08r
         (722 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    27   2.7  
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    27   3.6  
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M...    27   3.6  
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy...    27   3.6  
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa...    26   4.7  
SPAPB18E9.01 |trm5||tRNA |Schizosaccharomyces pombe|chr 1|||Manual     25   8.3  

>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1717

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +2

Query: 560 VLFTTSD-LYLCILKSYLFCSRDLVVCIY*SYFPKTS 667
           + F  SD + + +L SY F    ++VCI  S+F ++S
Sbjct: 167 IFFALSDGVPVALLGSYQFVDNKILVCILPSFFTRSS 203


>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
           Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = -1

Query: 221 KFTNSLLEFCVRGVFAFIPICI 156
           +F NS +  C+  VFA++ +C+
Sbjct: 566 EFLNSCINRCISRVFAYLDVCV 587


>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1258

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +1

Query: 70  NLFTKNVKKINNLYKIFQKQ 129
           N FT  +KKI NL+K  +KQ
Sbjct: 117 NTFTSRIKKIKNLFKKEKKQ 136


>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1115

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = -3

Query: 345 LISTNSRAHQVLRKSMSISFQYLLLIKDTN*NLVK 241
           +I T  R++++LR  +S+  + LLL K  N  LVK
Sbjct: 426 VIETLQRSNELLRMDISMQNEALLLRKQENDRLVK 460


>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 941

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 343 YLYELQGSSSFTKIYVNFFSIFTVDKRHKL 254
           Y++ L+  SSFTK +V F  I    K  K+
Sbjct: 6   YIFSLRSKSSFTKTWVPFTQIRNSSKSPKV 35


>SPAPB18E9.01 |trm5||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 435

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = -2

Query: 382 RNNLLILAP*SAPYLYELQGSSSFTKIYVNFFSIFTVDKRHKLKS 248
           + N+++ A    PY YE    + F     NF   F  D R  ++S
Sbjct: 260 KKNVIVFANDLNPYSYESLVENIFLNKVANFVKAFNQDGREFIRS 304


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,887,138
Number of Sequences: 5004
Number of extensions: 59316
Number of successful extensions: 155
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)