BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10a08r
(722 letters)
Database: mosquito
2352 sequences; 563,979 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF990671-1|ABS30732.1| 1256|Anopheles gambiae voltage-gated calc... 25 1.8
AY578811-1|AAT07316.1| 565|Anopheles gambiae thickveins protein. 25 3.1
>EF990671-1|ABS30732.1| 1256|Anopheles gambiae voltage-gated calcium
channel alpha2-delta subunit 1 protein.
Length = 1256
Score = 25.4 bits (53), Expect = 1.8
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +3
Query: 471 STYDNTREIKSAVG*LEKRNTF-FFVSFENQYYLL 572
+T DN +E+K+A+ +E NT F + E + LL
Sbjct: 328 ATPDNVKEVKTAINAVECENTANFSAALETAFELL 362
>AY578811-1|AAT07316.1| 565|Anopheles gambiae thickveins protein.
Length = 565
Score = 24.6 bits (51), Expect = 3.1
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
Frame = -3
Query: 189 PRRICFYTYMHTKCN----LKYNTLFLKYFIKIVYFFNV 85
P R +Y Y+ T+CN Y T+ + ++ FNV
Sbjct: 17 PARTVYYYYLFTQCNPLSTYLYRTILALRLVTLLPCFNV 55
Database: mosquito
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 563,979
Number of sequences in database: 2352
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 690,434
Number of Sequences: 2352
Number of extensions: 13292
Number of successful extensions: 56
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 73597131
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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