Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10a08f
         (627 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0293 - 28254673-28254878,28255189-28255306,28255767-282559...    29   4.0  
08_02_0864 + 21994286-21994989,21996257-21996958,21997221-219973...    28   7.0  

>01_06_0293 - 28254673-28254878,28255189-28255306,28255767-28255961,
            28256701-28256800,28256887-28256972,28257078-28257239,
            28257965-28258101,28258233-28258281,28258688-28258746,
            28258862-28258896,28259384-28259433,28260173-28260332,
            28260898-28260963,28261065-28261162,28261649-28261696,
            28262114-28262242,28262667-28262769,28262858-28262954,
            28263181-28263241,28263659-28263740,28263845-28263962,
            28264039-28266325
          Length = 1481

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +3

Query: 522  PESEEIQTECKITSVLSDEVYEK 590
            PE EE Q+ C++ S  SDE Y++
Sbjct: 1287 PEYEEFQSVCRVMSGFSDEFYKE 1309


>08_02_0864 +
           21994286-21994989,21996257-21996958,21997221-21997374,
           21997494-21997838,21998323-21999240,21999312-21999640,
           21999709-21999832,21999901-22000071,22000188-22001648,
           22002647-22002910,22003866-22004189
          Length = 1831

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = -1

Query: 231 LFSTVAVTAHQQHCNLYIITLKYAAHNKDCTYSIKLMSLITSTRQF 94
           +F + + T H Q+ + Y  T+ + AH  DC++  + +S +  T  F
Sbjct: 245 VFHSDSKTQHLQNSDEYFKTVCFDAHQVDCSHVKESVSPMQDTENF 290


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,079,182
Number of Sequences: 37544
Number of extensions: 293904
Number of successful extensions: 671
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 671
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)