Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10a08f
         (627 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97014-3|AAB52427.3|  856|Caenorhabditis elegans Hypothetical pr...    30   1.6  
Z73912-8|CAA98148.1| 1016|Caenorhabditis elegans Hypothetical pr...    27   8.3  
Z72517-7|CAA96698.1| 1016|Caenorhabditis elegans Hypothetical pr...    27   8.3  

>U97014-3|AAB52427.3|  856|Caenorhabditis elegans Hypothetical
           protein T05E8.3 protein.
          Length = 856

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = +1

Query: 475 KVNRNLAKTGPMRQRFQNLRKYKLNAK*RAF*AMKFTKKHLKNHRKHSQM 624
           KVN N  +TG   Q+FQNL   K          +K  KK + N +K  ++
Sbjct: 42  KVNGNSRQTGGQEQKFQNLEALKKKTM-----LLKKKKKQMNNFQKEEEL 86


>Z73912-8|CAA98148.1| 1016|Caenorhabditis elegans Hypothetical
           protein ZK524.4 protein.
          Length = 1016

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = +3

Query: 369 LPPVLSKECRKEMQYYKLLAKEVEKRISL 455
           +P VLS ECR  +Q   +L +E +KR SL
Sbjct: 244 IPDVLSDECRNLIQ--SMLVREPQKRASL 270


>Z72517-7|CAA96698.1| 1016|Caenorhabditis elegans Hypothetical
           protein ZK524.4 protein.
          Length = 1016

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = +3

Query: 369 LPPVLSKECRKEMQYYKLLAKEVEKRISL 455
           +P VLS ECR  +Q   +L +E +KR SL
Sbjct: 244 IPDVLSDECRNLIQ--SMLVREPQKRASL 270


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,807,489
Number of Sequences: 27780
Number of extensions: 286615
Number of successful extensions: 655
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 655
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)