Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10a08f
         (627 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   2.4  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    22   5.6  
AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor prot...    21   9.8  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
 Frame = +1

Query: 382 YQKNVAKRCSTTNFWPKKSKSEYHCFSPI*LKVNRNL-AKTGPMRQRFQN 528
           Y++   + CSTT   P KS +  H  +     +N NL A  G     F N
Sbjct: 581 YKRRPQRACSTTGGVPSKSPTLTHSPTMYGDALNANLQAALGDSNMGFLN 630


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -1

Query: 258 T*SSYGGKNLFSTVAVTAHQQHCNLYIITLKYAAHNKDC 142
           T +SY   NL  ++   +  ++CN   +T+K    NK C
Sbjct: 73  TITSYHRINLKCSLVEFSENKNCNAGSLTVKKNFANKYC 111


>AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor
           protein.
          Length = 72

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 9/31 (29%), Positives = 14/31 (45%)
 Frame = +1

Query: 364 LFYRLSYQKNVAKRCSTTNFWPKKSKSEYHC 456
           ++ R   Q+   K+C T    P+    EY C
Sbjct: 30  MYMRRKCQECRLKKCLTVGMRPECMVPEYQC 60


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,125
Number of Sequences: 438
Number of extensions: 3541
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)