Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10a08f
         (627 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g66730.1 68414.m07585 ATP dependent DNA ligase family protein...    30   1.1  
At3g46180.1 68416.m04997 UDP-galactose/UDP-glucose transporter-r...    28   4.4  
At4g33790.1 68417.m04796 acyl CoA reductase, putative similar to...    28   5.8  
At2g04235.1 68415.m00411 expressed protein weak similarity to ne...    28   5.8  
At4g39520.1 68417.m05588 GTP-binding protein, putative similar t...    27   7.7  

>At1g66730.1 68414.m07585 ATP dependent DNA ligase family protein
            contains Pfam profile: PF01068 ATP dependent DNA ligase
            domain
          Length = 1417

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +3

Query: 522  PESEEIQTECKITSVLSDEVYEKALKES 605
            PE+EE Q+ C++ S  SD  Y + +K S
Sbjct: 1276 PETEEFQSVCRVMSGFSDAFYIEVMKSS 1303


>At3g46180.1 68416.m04997 UDP-galactose/UDP-glucose
           transporter-related contains weak similarity to
           UDP-galactose/UDP-glucose transporter (GI:22651763)
           [Arabidopsis thaliana]
          Length = 347

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = -1

Query: 165 YAAHNKDCTYSIKLMSLITSTRQFFI 88
           + + ++DC + I L+S + +  QFFI
Sbjct: 240 FVSRHRDCLFDIALLSTVATASQFFI 265


>At4g33790.1 68417.m04796 acyl CoA reductase, putative similar to
           acyl CoA reductase [Simmondsia chinensis] GI:5020215;
           contains Pfam profile PF03015: Male sterility protein;
           No start codon identified, may contain anomalous
           splicing at 5' end.
          Length = 380

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 15/58 (25%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
 Frame = +3

Query: 306 VKSVRQSGQYVSC---MKINGVPLLPPVLSKECRKEMQYYKLLAKEVEKRISLLQPYI 470
           + S+R   +Y++    + + G+ L+  +L K   KE QY+      + + + L QPY+
Sbjct: 269 LSSMRSFHRYMTIRYLIALKGLELVNIILCKLFEKEFQYFNKKINFIFRLVDLYQPYL 326


>At2g04235.1 68415.m00411 expressed protein weak similarity to
           neurofilament protein (GI:161292) [Loligo pealei]; weak
           similarity to Glucoamylase S1/S2 precursor (EC 3.2.1.3)
           (Glucan 1,4-alpha- glucosidase) (1,4-alpha-D-glucan
           glucohydrolase) (Swiss-Prot:P08640) [Saccharomyces
           cerevisiae]
          Length = 1226

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -2

Query: 266 TGSPSLVTEEKTYFPRSPSPL 204
           TGS  ++TE K  FP+SP P+
Sbjct: 230 TGSAMVLTEPKKLFPKSPVPV 250


>At4g39520.1 68417.m05588 GTP-binding protein, putative similar to
           SP|Q9Y295 Developmentally regulated GTP-binding protein
           1 (DRG 1) {Homo sapiens}; contains Pfam profiles
           PF02824: TGS domain, PF01018: GTP1/OBG family
          Length = 369

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 17/35 (48%), Positives = 19/35 (54%)
 Frame = -1

Query: 243 GGKNLFSTVAVTAHQQHCNLYIITLKYAAHNKDCT 139
           GG NL STVAVT H     +  I  +Y  HN D T
Sbjct: 188 GGINLTSTVAVT-HLDLDTVKAICGEYRMHNADIT 221


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,642,539
Number of Sequences: 28952
Number of extensions: 250638
Number of successful extensions: 546
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 546
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1275599520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)