Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10a07r
(783 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po... 31 0.19
SPAC23H3.04 |||conserved fungal protein|Schizosaccharomyces pomb... 29 0.75
SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription te... 28 1.7
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 28 1.7
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo... 27 3.0
SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces pomb... 27 4.0
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha... 27 4.0
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 27 4.0
SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase |Schizosa... 27 4.0
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma... 26 7.0
SPCC1322.16 |phb2||prohibitin Phb2|Schizosaccharomyces pombe|chr... 25 9.3
SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non ca... 25 9.3
>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 507
Score = 31.1 bits (67), Expect = 0.19
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = -2
Query: 314 HNTKYNQYLKMSTSTCNCNARDRVVYGGNSADSTRE 207
+++ YN+ M TS+C+C++ + YGGN A E
Sbjct: 47 YSSTYNEITNMDTSSCSCSSTPK-SYGGNLAPFDEE 81
>SPAC23H3.04 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 300
Score = 29.1 bits (62), Expect = 0.75
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = +3
Query: 651 FQALTYSTVVVTGEDAVVQFVLEVLV 728
F +T V+V EDAVV+FVL +LV
Sbjct: 181 FLGVTVQYVMVLPEDAVVEFVLTILV 206
>SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription
termination factor Reb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 504
Score = 27.9 bits (59), Expect = 1.7
Identities = 8/38 (21%), Positives = 22/38 (57%)
Frame = -2
Query: 629 SIVQNVVNNLIIDKRRNTMEYCYKLWVGNGQDIVKKYF 516
+I+ V+N I+D+ + ++C ++W G ++ ++
Sbjct: 247 AIISQEVHNFIMDQGWSEYQFCNQIWAGKCPKTIRMFY 284
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 27.9 bits (59), Expect = 1.7
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -2
Query: 737 SPSYQDLEDKLYNSILTGDYDSAVRKSLE 651
+P DLE + ++LTGD SAV+ LE
Sbjct: 548 NPEDSDLEKNITEALLTGDVLSAVKACLE 576
>SPBC12C2.02c |ste20|ste16|sterility protein
Ste20|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1309
Score = 27.1 bits (57), Expect = 3.0
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +1
Query: 106 AFTIVSSSKASLNSRL*MKNRTSFSYLAGWKNHCSLVLS 222
+ T +S+ S S L K T FSY AG + CS+ +S
Sbjct: 117 SLTRSASATVSRKSSLQEKYSTRFSYKAGCSDSCSVTVS 155
>SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 394
Score = 26.6 bits (56), Expect = 4.0
Identities = 10/35 (28%), Positives = 21/35 (60%)
Frame = -2
Query: 254 RDRVVYGGNSADSTREQWFFQPAKYENDVLFFIYN 150
R R+V G ++A + + W F +Y ++F+++N
Sbjct: 162 RQRIVVGKHAAHFSLDHWIF-VVEYYAPIVFYVFN 195
>SPAC4F8.11 |||WD repeat protein, human WDR24
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 846
Score = 26.6 bits (56), Expect = 4.0
Identities = 9/32 (28%), Positives = 20/32 (62%)
Frame = -2
Query: 317 AHNTKYNQYLKMSTSTCNCNARDRVVYGGNSA 222
+HN +N + + S ++ + +R+ V+ GNS+
Sbjct: 616 SHNEMFNSFHRSSVTSASIKSREAVLSAGNSS 647
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 26.6 bits (56), Expect = 4.0
Identities = 17/63 (26%), Positives = 32/63 (50%)
Frame = -3
Query: 745 TA*ALLTKTSRTNCTTASSPVTTTVLYVRAWNTRAKARAASFKM*LTI*SLTRDGTPWST 566
T A T +S ++ ++S+P+T++ A + A + +A + + S T TP S+
Sbjct: 235 TTSATATSSSISSTVSSSTPLTSSNSTTAATSASATSSSAQYNTSSLLPSSTPSSTPLSS 294
Query: 565 ATS 557
A S
Sbjct: 295 ANS 297
>SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 889
Score = 26.6 bits (56), Expect = 4.0
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -2
Query: 626 IVQNVVNNLIIDKRRNTMEYCYKLWVGNGQDIVK 525
+++++ NL I N +EY LW NG I K
Sbjct: 447 VLKDIFFNLQIGVTFNILEYLRHLWSNNGDAIAK 480
>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
2|||Manual
Length = 918
Score = 25.8 bits (54), Expect = 7.0
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 5/40 (12%)
Frame = +3
Query: 513 WEVLFDNILS--VADPQL---VAVLHGVPSLVNDQIVNYI 617
W+VLF + L+ ++ P V LHGV + VN + +YI
Sbjct: 188 WDVLFHDYLNETLSQPAFSFNVPDLHGVDNKVNQYVFDYI 227
>SPCC1322.16 |phb2||prohibitin Phb2|Schizosaccharomyces pombe|chr
3|||Manual
Length = 279
Score = 25.4 bits (53), Expect = 9.3
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = -1
Query: 171 RPVLHLQPRIQRCLGARYDRERL 103
RP +H P+I R LG YD L
Sbjct: 106 RPDVHALPKIYRTLGGDYDERVL 128
>SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non
catalytic subunit Arm1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 811
Score = 25.4 bits (53), Expect = 9.3
Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 1/92 (1%)
Frame = -2
Query: 365 SWKFITLWENNRVYFKAHNTKYNQYL-KMSTSTCNCNARDRVVYGGNSADSTREQWFFQP 189
+WK I+L E R+++ QYL K S+ N + + YG + + E P
Sbjct: 538 TWKSISLVERARIHYLTAFKPPKQYLPKCSSPKDNRDLKVFADYGSDKLPTVEESLRNSP 597
Query: 188 AKYENDVLFFIYNREFNDALELDTIVNASGDR 93
+ D L +I+ +L D+IVN ++
Sbjct: 598 ---KPDTL-WIHLTVIGHSLVQDSIVNGDFEK 625
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,998,673
Number of Sequences: 5004
Number of extensions: 60995
Number of successful extensions: 203
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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