BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fner10a07r (783 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At1g64255.1 68414.m07280 SWIM zinc finger family protein contain... 35 0.070 At5g62220.1 68418.m07813 exostosin family protein contains Pfam ... 30 1.5 At1g64260.1 68414.m07281 zinc finger protein-related contains Pf... 30 1.5 At4g21550.1 68417.m03113 transcriptional factor B3 family protei... 29 2.6 At5g59210.2 68418.m07421 myosin heavy chain-related contains wea... 29 4.6 At5g59210.1 68418.m07420 myosin heavy chain-related contains wea... 29 4.6 At5g65450.1 68418.m08231 ubiquitin carboxyl-terminal hydrolase f... 28 6.1 At4g16050.1 68417.m02435 expressed protein 28 6.1 At1g49920.1 68414.m05598 zinc finger protein-related weak simila... 28 8.0 >At1g64255.1 68414.m07280 SWIM zinc finger family protein contains Pfam profile PF04434: SWIM zinc finger Length = 750 Score = 34.7 bits (76), Expect = 0.070 Identities = 13/33 (39%), Positives = 20/33 (60%) Frame = -2 Query: 602 LIIDKRRNTMEYCYKLWVGNGQDIVKKYFPLSF 504 +++D + EY KL + +G D KYFPL+F Sbjct: 386 IVVDTKNLNCEYQLKLMIASGVDAANKYFPLAF 418 >At5g62220.1 68418.m07813 exostosin family protein contains Pfam profile: PF03016 Exostosin family Length = 517 Score = 30.3 bits (65), Expect = 1.5 Identities = 21/61 (34%), Positives = 36/61 (59%), Gaps = 4/61 (6%) Frame = +1 Query: 61 PETSPSCPTAL----RSPEAFTIVSSSKASLNSRL*MKNRTSFSYLAGWKNHCSLVLSAL 228 P ++PS P L R+P++ T + K S NS + NR+S Y+A ++HC+ ++ +L Sbjct: 3 PVSNPSSPEHLLKKSRTPDSTTSIDR-KNSFNSLHSVGNRSS--YIAASRSHCTWLILSL 59 Query: 229 L 231 L Sbjct: 60 L 60 >At1g64260.1 68414.m07281 zinc finger protein-related contains Pfam profiles PF03108: MuDR family transposase, PF04434: SWIM zinc finger Length = 719 Score = 30.3 bits (65), Expect = 1.5 Identities = 11/33 (33%), Positives = 20/33 (60%) Frame = -2 Query: 602 LIIDKRRNTMEYCYKLWVGNGQDIVKKYFPLSF 504 +++D + +Y KL + +G D K+FPL+F Sbjct: 379 IVVDTKSLNGKYQLKLMIASGVDAANKFFPLAF 411 >At4g21550.1 68417.m03113 transcriptional factor B3 family protein low similarity to SP|Q01593 Abscisic acid-insensitive protein 3 {Arabidopsis thaliana}, SP|P37398 Viviparous protein homolog {Oryza sativa}; contains Pfam profile PF02362: B3 DNA binding domain Length = 721 Score = 29.5 bits (63), Expect = 2.6 Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 4/50 (8%) Frame = +2 Query: 626 CCPGLGSRIPSSYVQHCRSHR*GCCCTVC---PRGLG-KKGSCCPRIVHD 763 C G I + +H R HR GC C +C P G+G K CC V D Sbjct: 545 CTEVEGLLISPTTTKHPR-HRDGCTCIICIQSPSGIGPKHDRCCSCAVCD 593 >At5g59210.2 68418.m07421 myosin heavy chain-related contains weak similarity to Myosin heavy chain, gizzard smooth muscle (Swiss-Prot:P10587) [Gallus gallus] Length = 433 Score = 28.7 bits (61), Expect = 4.6 Identities = 17/63 (26%), Positives = 34/63 (53%) Frame = -2 Query: 770 RRRRGLSADSMSPSYQDLEDKLYNSILTGDYDSAVRKSLEYESQGQGSIVQNVVNNLIID 591 R++ + D+ S + L ++ NS L+ Y ++ S ++E+Q + + QNV ++D Sbjct: 283 RQKLLMEIDNQSSEIEKLFEE--NSNLSASYQESINISNQWENQVKECLKQNVELREVLD 340 Query: 590 KRR 582 K R Sbjct: 341 KLR 343 >At5g59210.1 68418.m07420 myosin heavy chain-related contains weak similarity to Myosin heavy chain, gizzard smooth muscle (Swiss-Prot:P10587) [Gallus gallus] Length = 434 Score = 28.7 bits (61), Expect = 4.6 Identities = 17/63 (26%), Positives = 34/63 (53%) Frame = -2 Query: 770 RRRRGLSADSMSPSYQDLEDKLYNSILTGDYDSAVRKSLEYESQGQGSIVQNVVNNLIID 591 R++ + D+ S + L ++ NS L+ Y ++ S ++E+Q + + QNV ++D Sbjct: 284 RQKLLMEIDNQSSEIEKLFEE--NSNLSASYQESINISNQWENQVKECLKQNVELREVLD 341 Query: 590 KRR 582 K R Sbjct: 342 KLR 344 >At5g65450.1 68418.m08231 ubiquitin carboxyl-terminal hydrolase family protein / zinc finger (MYND type) family protein similar to ubiquitin-specific protease 16 (UBP16) [Arabidopsis thaliana] GI:11993477; contains Pfam profiles PF00443: Ubiquitin carboxyl-terminal hydrolase, PF01753: MYND finger Length = 731 Score = 28.3 bits (60), Expect = 6.1 Identities = 19/77 (24%), Positives = 35/77 (45%) Frame = +1 Query: 85 TALRSPEAFTIVSSSKASLNSRL*MKNRTSFSYLAGWKNHCSLVLSALLPPYTTRSRALQ 264 T+ S + + SSS L S+ K + S + +G K V+ PP +++ Sbjct: 244 TSEPSSASAAMSSSSTLLLPSKANSKPKVSQASSSGLKTSVQKVVQHFRPPQSSKKSQPS 303 Query: 265 LQVDVLIFKYWLYLVLW 315 +D + F Y L++ L+ Sbjct: 304 SSIDEMSFSYELFVKLY 320 >At4g16050.1 68417.m02435 expressed protein Length = 666 Score = 28.3 bits (60), Expect = 6.1 Identities = 17/48 (35%), Positives = 24/48 (50%) Frame = -2 Query: 194 QPAKYENDVLFFIYNREFNDALELDTIVNASGDRKAVGHDGEVSGLPE 51 + A+ E+D I R N + D I N G+R + D VSGLP+ Sbjct: 535 ESAETEDDDNMTIAQR-INSRKKSDDIENTEGERSRLVADNNVSGLPQ 581 >At1g49920.1 68414.m05598 zinc finger protein-related weak similarity to mudrA [Zea mays] GI:540581, MURAZC [Zea mays] GI:1857256; contains Pfam profiles PF03108: MuDR family transposase, PF04434: SWIM zinc finger Length = 785 Score = 27.9 bits (59), Expect = 8.0 Identities = 20/72 (27%), Positives = 34/72 (47%) Frame = -2 Query: 719 LEDKLYNSILTGDYDSAVRKSLEYESQGQGSIVQNVVNNLIIDKRRNTMEYCYKLWVGNG 540 L D Y+S LT D + A + L + Q+ +++D + +Y KL + + Sbjct: 344 LVDWQYDS-LTHDPEHASFRGLFWAFSQSIQGFQHCRPLIVVDTKNLGGKYKMKLMIASA 402 Query: 539 QDIVKKYFPLSF 504 D +YFPL+F Sbjct: 403 FDATNQYFPLAF 414 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,990,845 Number of Sequences: 28952 Number of extensions: 327612 Number of successful extensions: 933 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 903 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 932 length of database: 12,070,560 effective HSP length: 80 effective length of database: 9,754,400 effective search space used: 1755792000 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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