Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10a07f
         (668 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L01617-1|AAA30097.1|   46|Tribolium castaneum zinc finger protei...    23   1.7  
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    23   2.3  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    23   3.0  
EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine hydroxy...    22   5.2  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    22   5.2  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    22   5.2  
AM292324-1|CAL23136.1|  398|Tribolium castaneum gustatory recept...    22   5.2  
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    21   6.9  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    21   6.9  
AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.           21   6.9  
EF222295-1|ABN79655.1|  146|Tribolium castaneum arginine vasopre...    21   9.1  

>L01617-1|AAA30097.1|   46|Tribolium castaneum zinc finger protein
           protein.
          Length = 46

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -3

Query: 177 RSHR*GCCCTVCPR 136
           R+H   C CT+CP+
Sbjct: 2   RTHTLPCKCTICPK 15


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +1

Query: 259 LTRDGTPWSTATSCGSATDRILSKSTS 339
           +TR  T  ST TS    +D  LSK  S
Sbjct: 383 ITRKSTSSSTHTSSQQTSDSFLSKRNS 409


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = -3

Query: 171 HR*GCCCTVCPRGL 130
           HR G CC  CP  L
Sbjct: 99  HRPGRCCKTCPGDL 112


>EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine
           hydroxylase protein.
          Length = 532

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -2

Query: 340 GKYFLTISCPLPTHSL*QYSMVFRLL 263
           G  F T+   +P H+  +Y  VF++L
Sbjct: 263 GSVFNTVLELMPKHACSEYCRVFKML 288


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +3

Query: 27  APNKMKLLVVFAMCVLAASA 86
           APN  +  VV+A C L A+A
Sbjct: 123 APNGHQTQVVYASCKLQAAA 142


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 12/19 (63%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
 Frame = -2

Query: 589 LQVDVLIF-KYWLYLVLWA 536
           LQV  + F  YWLYLVL A
Sbjct: 49  LQVLFVSFVSYWLYLVLEA 67


>AM292324-1|CAL23136.1|  398|Tribolium castaneum gustatory receptor
           candidate 3 protein.
          Length = 398

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 12/19 (63%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
 Frame = -2

Query: 589 LQVDVLIF-KYWLYLVLWA 536
           LQV  + F  YWLYLVL A
Sbjct: 67  LQVLFVSFVSYWLYLVLEA 85


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 334 YFLTISCPLPTHSL*QYSMVFRL 266
           Y  TI+ PL    L  Y+M FR+
Sbjct: 323 YDSTITAPLSNPPLWPYTMYFRM 345


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +1

Query: 265 RDGTPWSTATSCGSATDR 318
           R+GT  +TA SC S+T R
Sbjct: 378 RNGTFSTTANSCRSSTFR 395


>AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.
          Length = 290

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = -1

Query: 92 DAGAGSEHAHCEHNEKFHFVR 30
          D    +EH +  +NE +H V+
Sbjct: 30 DKNQNTEHNYTHNNEMYHSVK 50


>EF222295-1|ABN79655.1|  146|Tribolium castaneum arginine
           vasopressin-like peptide protein.
          Length = 146

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -3

Query: 162 GCCCTVCPRG 133
           GC  T CPRG
Sbjct: 20  GCLITNCPRG 29


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,672
Number of Sequences: 336
Number of extensions: 3070
Number of successful extensions: 14
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17385535
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)