Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10a07f
(668 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 31 0.11
SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po... 31 0.15
SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr ... 30 0.26
SPAC23H3.04 |||conserved fungal protein|Schizosaccharomyces pomb... 29 0.61
SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription te... 28 1.4
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 27 1.8
SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase |Schizosa... 27 2.4
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha... 27 3.2
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc... 26 4.3
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma... 26 5.6
SPBC947.08c |||histone promoter control protein Hpc2 |Schizosacc... 25 9.9
SPBC365.02c |cox10||protoheme IX farnesyltransferase|Schizosacch... 25 9.9
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 31.5 bits (68), Expect = 0.11
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = +3
Query: 84 AGVVELSADSMSPSNQDLEDKLYNSILTGDYDSAVRKSLE 203
A +V+ S +P + DLE + ++LTGD SAV+ LE
Sbjct: 537 AEIVKDSFKIFNPEDSDLEKNITEALLTGDVLSAVKACLE 576
>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 507
Score = 31.1 bits (67), Expect = 0.15
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +3
Query: 540 HNTKYNQYLKMSTSTCNCNARDRVVYGGNSADSTRE 647
+++ YN+ M TS+C+C++ + YGGN A E
Sbjct: 47 YSSTYNEITNMDTSSCSCSSTPK-SYGGNLAPFDEE 81
>SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 255
Score = 30.3 bits (65), Expect = 0.26
Identities = 16/55 (29%), Positives = 30/55 (54%)
Frame = +3
Query: 69 VLAASAGVVELSADSMSPSNQDLEDKLYNSILTGDYDSAVRKSLEYESQGQGSIV 233
V+ A+AG+ + S+ N+D+ K+ L G Y +A ++ QG+GS++
Sbjct: 91 VMIANAGIA-IPHLSLEDKNEDIWTKVVGINLNGAYYTAQAAGHHFKKQGKGSLI 144
>SPAC23H3.04 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 300
Score = 29.1 bits (62), Expect = 0.61
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = -1
Query: 203 FQALTYSTVVVTGEDAVVQFVLEVLV 126
F +T V+V EDAVV+FVL +LV
Sbjct: 181 FLGVTVQYVMVLPEDAVVEFVLTILV 206
>SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription
termination factor Reb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 504
Score = 27.9 bits (59), Expect = 1.4
Identities = 8/38 (21%), Positives = 22/38 (57%)
Frame = +3
Query: 225 SIVQNVVNNLIIDKRRNTMEYCYKLWVGNGQDIVKKYF 338
+I+ V+N I+D+ + ++C ++W G ++ ++
Sbjct: 247 AIISQEVHNFIMDQGWSEYQFCNQIWAGKCPKTIRMFY 284
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 27.5 bits (58), Expect = 1.8
Identities = 19/70 (27%), Positives = 35/70 (50%)
Frame = +1
Query: 88 ASWNYPRTA*ALLTKTSRTNCTTASSPVTTTVLYVRAWNTRAKARAASFKM*LTI*SLTR 267
AS + T A T +S ++ ++S+P+T++ A + A + +A + + S T
Sbjct: 228 ASSSLNSTTSATATSSSISSTVSSSTPLTSSNSTTAATSASATSSSAQYNTSSLLPSSTP 287
Query: 268 DGTPWSTATS 297
TP S+A S
Sbjct: 288 SSTPLSSANS 297
>SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 889
Score = 27.1 bits (57), Expect = 2.4
Identities = 21/78 (26%), Positives = 31/78 (39%)
Frame = +3
Query: 96 ELSADSMSPSNQDLEDKLYNSILTGDYDSAVRKSLEYESQGQGSIVQNVVNNLIIDKRRN 275
E+ S N LE D D R ++ + Q +++++ NL I N
Sbjct: 404 EMGYTQKSIENDMLESFQKGVFRINDLDCLGRTNV-IQYQISRLVLKDIFFNLQIGVTFN 462
Query: 276 TMEYCYKLWVGNGQDIVK 329
+EY LW NG I K
Sbjct: 463 ILEYLRHLWSNNGDAIAK 480
>SPAC4F8.11 |||WD repeat protein, human WDR24
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 846
Score = 26.6 bits (56), Expect = 3.2
Identities = 9/32 (28%), Positives = 20/32 (62%)
Frame = +3
Query: 537 AHNTKYNQYLKMSTSTCNCNARDRVVYGGNSA 632
+HN +N + + S ++ + +R+ V+ GNS+
Sbjct: 616 SHNEMFNSFHRSSVTSASIKSREAVLSAGNSS 647
>SPBC30D10.10c |tor1||phosphatidylinositol kinase
Tor1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2335
Score = 26.2 bits (55), Expect = 4.3
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Frame = +3
Query: 96 ELSADSMSPSNQDLEDKLYNSILTGDYDS------AVRKSLEYESQGQGSIVQNVVNNL 254
ELS +S++ N D+ +++ I + D A+ K +E+ES+G + + N L
Sbjct: 32 ELSGESLARFNNDINRRIFELIHSHDSHERFGGILAIGKLIEFESEGDVTNLSRYANYL 90
>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
2|||Manual
Length = 918
Score = 25.8 bits (54), Expect = 5.6
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 5/40 (12%)
Frame = -1
Query: 341 WEVLFDNILS--VADPQL---VAVLHGVPSLVNDQIVNYI 237
W+VLF + L+ ++ P V LHGV + VN + +YI
Sbjct: 188 WDVLFHDYLNETLSQPAFSFNVPDLHGVDNKVNQYVFDYI 227
>SPBC947.08c |||histone promoter control protein Hpc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 338
Score = 25.0 bits (52), Expect = 9.9
Identities = 19/77 (24%), Positives = 36/77 (46%)
Frame = +3
Query: 12 ERSEKAPNKMKLLVVFAMCVLAASAGVVELSADSMSPSNQDLEDKLYNSILTGDYDSAVR 191
ERS+K K K + A A + VV SAD+ ++D+E + + T + A +
Sbjct: 133 ERSKKTKKKKKTSLSNATHPAPAVSAVVA-SADASFDDSRDIESEDEQPLRTLSIEMAAK 191
Query: 192 KSLEYESQGQGSIVQNV 242
+L+ + + ++V
Sbjct: 192 NALKEAKRENAKVPKDV 208
>SPBC365.02c |cox10||protoheme IX
farnesyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 387
Score = 25.0 bits (52), Expect = 9.9
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +3
Query: 519 NRVYFKAHNTKYNQYLKMSTSTCNCNA 599
+R +F + KYN+ + TST NA
Sbjct: 35 SRTFFSPTHIKYNRLSTLDTSTSTANA 61
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,542,914
Number of Sequences: 5004
Number of extensions: 50231
Number of successful extensions: 181
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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