Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10a07f
         (668 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical ...    31   0.74 
Z99283-1|CAB16536.2|  414|Caenorhabditis elegans Hypothetical pr...    28   5.2  
AL032665-1|CAA21771.1|  294|Caenorhabditis elegans Hypothetical ...    28   6.9  
U80032-3|AAM15556.1|  404|Caenorhabditis elegans Sox (mammalian ...    27   9.1  
U49830-13|AAK31474.1|  826|Caenorhabditis elegans Hypothetical p...    27   9.1  
AL132904-17|CAC35850.1|  240|Caenorhabditis elegans Hypothetical...    27   9.1  
AF101319-3|AAC69355.1|  331|Caenorhabditis elegans Hypothetical ...    27   9.1  

>AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical
           protein Y8A9A.2 protein.
          Length = 1360

 Score = 31.1 bits (67), Expect = 0.74
 Identities = 20/69 (28%), Positives = 32/69 (46%)
 Frame = +1

Query: 133 TSRTNCTTASSPVTTTVLYVRAWNTRAKARAASFKM*LTI*SLTRDGTPWSTATSCGSAT 312
           TS T  TTA+S   +T     +  T +   + +     +  S T + T  ST  S  ++T
Sbjct: 187 TSSTTTTTATSTTESTSTSTDSTTTESTTESTTESTSTSTDSTTTESTTESTTESTSTST 246

Query: 313 DRILSKSTS 339
           D   ++STS
Sbjct: 247 DSTTTESTS 255


>Z99283-1|CAB16536.2|  414|Caenorhabditis elegans Hypothetical
           protein Y70C5C.2 protein.
          Length = 414

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 10/86 (11%)
 Frame = +3

Query: 321 IVKKYFPLSFRLIMAGNYVKLIYRNYNLALKLGS-TTNPSNERIAYGDG-------VDKH 476
           I    FP+++  I + NY+     +YN+ LK     T+  N+ +   DG       + K+
Sbjct: 312 ITSPNFPMNYNNITSCNYLLTTLGSYNVMLKFNKFYTDMKNDFVTLYDGDSTKSPVIAKY 371

Query: 477 TELVSWKFITLWENNR--VYFKAHNT 548
           +    W F  +   N   V F++++T
Sbjct: 372 SGYYEWPFFNVSTGNSMLVTFRSNST 397


>AL032665-1|CAA21771.1|  294|Caenorhabditis elegans Hypothetical
           protein Y76A2A.1 protein.
          Length = 294

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 18/45 (40%), Positives = 25/45 (55%)
 Frame = -2

Query: 166 VRMLLYSLSSRSWLEGLMLSADSSTTPALAASTHIANTTRSFILL 32
           V++LL ++S R     L  SA S+ T   A S HIA  ++  ILL
Sbjct: 118 VQLLLCNISDRDIFVKLRCSAASNITALPAGSGHIAPKSQMRILL 162


>U80032-3|AAM15556.1|  404|Caenorhabditis elegans Sox (mammalian sry
           box) familyprotein 1 protein.
          Length = 404

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 24/93 (25%), Positives = 42/93 (45%)
 Frame = +1

Query: 43  NFSLCSQCACSLPAPASWNYPRTA*ALLTKTSRTNCTTASSPVTTTVLYVRAWNTRAKAR 222
           NF L    A  +  P +W     A A  T +  TN T+++S  T+  L    + T A   
Sbjct: 8   NFMLDCGMAPHMMPPINWAAAAIAVASST-SGATNATSSNSVATSQQLQHHPYGTAAGGY 66

Query: 223 AASFKM*LTI*SLTRDGTPWSTATSCGSATDRI 321
             + +      ++ +  TP+S AT+C  +++ I
Sbjct: 67  KHAQQ------AIPKSVTPYSDATNCKKSSNHI 93


>U49830-13|AAK31474.1|  826|Caenorhabditis elegans Hypothetical
           protein C33F10.2 protein.
          Length = 826

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 7/28 (25%), Positives = 18/28 (64%)
 Frame = +3

Query: 276 TMEYCYKLWVGNGQDIVKKYFPLSFRLI 359
           T  YC+K ++ +  +++K+Y  + + L+
Sbjct: 557 TYRYCHKFYLKDNSEVIKEYLGIFYHLV 584


>AL132904-17|CAC35850.1|  240|Caenorhabditis elegans Hypothetical
           protein Y111B2A.21 protein.
          Length = 240

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 20/71 (28%), Positives = 33/71 (46%)
 Frame = +3

Query: 330 KYFPLSFRLIMAGNYVKLIYRNYNLALKLGSTTNPSNERIAYGDGVDKHTELVSWKFITL 509
           +Y P+ FR  +    V    R+   A K+ S  +PS    A+G G +  T+   W  +T+
Sbjct: 119 QYLPMPFRTSIPMKLVIFAVRSEESAEKIRSLIDPSMWIAAFGGGTE--TQKFLWSELTV 176

Query: 510 WENNRVYFKAH 542
            +    + KAH
Sbjct: 177 ED----FVKAH 183


>AF101319-3|AAC69355.1|  331|Caenorhabditis elegans Hypothetical
           protein K08D9.5 protein.
          Length = 331

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
 Frame = +3

Query: 363 AGNYVKLIYRNYNLALKLGSTTNPSNERIAYGDGVD-KHTELVSWKFITLWENNRVYFKA 539
           A   +K+I   Y++     S     NE  A  + +D  HT + + +FIT  ++N V F  
Sbjct: 57  ANTMIKIIQNEYSI----DSLLETDNETSALIETLDVSHTFIEAAEFITFLDSNDVLFPV 112

Query: 540 HNTKYNQ 560
           +   Y Q
Sbjct: 113 NYPTYTQ 119


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,372,948
Number of Sequences: 27780
Number of extensions: 297028
Number of successful extensions: 956
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 901
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 956
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)