Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10a06r
         (472 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin relat...    32   0.24 
AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical...    31   0.32 
AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical ...    31   0.32 
AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical...    31   0.55 
Z81579-5|CAB04654.3| 1305|Caenorhabditis elegans Hypothetical pr...    27   5.1  
AY959881-1|AAX56914.1| 1305|Caenorhabditis elegans nephrocystin-...    27   5.1  

>AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin related.
            see also lmb-protein 1 protein.
          Length = 1067

 Score = 31.9 bits (69), Expect = 0.24
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = -2

Query: 285  SCISGKRGRRC--CNIWHWGSVDSISGSRARFQLSGN 181
            +C SG +G RC  C   HWGS   + G+  R   +GN
Sbjct: 973  NCKSGYQGERCGECAQNHWGSPREVGGTCERCDCNGN 1009


>AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical
            protein Y64G10A.7 protein.
          Length = 1651

 Score = 31.5 bits (68), Expect = 0.32
 Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
 Frame = -2

Query: 300  EHGASSCISGKRGRRC---CNIWHWGSVDSISGSRARFQLSGNSGRKHSRCCTSILRKFS 130
            EH   SC+SG  G +C   C   +    D ISG       S   G +  +C    L+ + 
Sbjct: 1195 EHCEKSCVSGHYGAKCEETCECENGALCDPISG-----HCSCQPGWRGKKCNRPCLKGYF 1249

Query: 129  GRQHCVTVDCCCHGS 85
            GR HC +  C C  S
Sbjct: 1250 GR-HC-SQSCRCANS 1262



 Score = 27.9 bits (59), Expect = 3.9
 Identities = 19/63 (30%), Positives = 26/63 (41%)
 Frame = -2

Query: 303  KEHGASSCISGKRGRRCCNIWHWGSVDSISGSRARFQLSGNSGRKHSRCCTSILRKFSGR 124
            KE+G   CI G  G  C  +  +G        R   +   +  RK  RC    L  +SG 
Sbjct: 1138 KENGDCECIDGWTGPSCEFLCPFGQFGRNCAQRCNCKNGASCDRKTGRC--ECLPGWSG- 1194

Query: 123  QHC 115
            +HC
Sbjct: 1195 EHC 1197


>AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical
            protein Y64G10A.7 protein.
          Length = 1651

 Score = 31.5 bits (68), Expect = 0.32
 Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
 Frame = -2

Query: 300  EHGASSCISGKRGRRC---CNIWHWGSVDSISGSRARFQLSGNSGRKHSRCCTSILRKFS 130
            EH   SC+SG  G +C   C   +    D ISG       S   G +  +C    L+ + 
Sbjct: 1195 EHCEKSCVSGHYGAKCEETCECENGALCDPISG-----HCSCQPGWRGKKCNRPCLKGYF 1249

Query: 129  GRQHCVTVDCCCHGS 85
            GR HC +  C C  S
Sbjct: 1250 GR-HC-SQSCRCANS 1262



 Score = 27.9 bits (59), Expect = 3.9
 Identities = 19/63 (30%), Positives = 26/63 (41%)
 Frame = -2

Query: 303  KEHGASSCISGKRGRRCCNIWHWGSVDSISGSRARFQLSGNSGRKHSRCCTSILRKFSGR 124
            KE+G   CI G  G  C  +  +G        R   +   +  RK  RC    L  +SG 
Sbjct: 1138 KENGDCECIDGWTGPSCEFLCPFGQFGRNCAQRCNCKNGASCDRKTGRC--ECLPGWSG- 1194

Query: 123  QHC 115
            +HC
Sbjct: 1195 EHC 1197


>AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical
            protein Y45F10B.10 protein.
          Length = 1592

 Score = 30.7 bits (66), Expect = 0.55
 Identities = 19/51 (37%), Positives = 25/51 (49%)
 Frame = +3

Query: 87   YHGSSSQL*HNAAGH*ISVVCLCSSGCASCRYSR*AETEHGSH*WSQQTPS 239
            YH +S QL     GH  +V CLCSS  +S   S   +       +SQ TP+
Sbjct: 896  YHIASEQLIGTFKGHTAAVTCLCSSNDSSLFVSTSFDKTVNVWVFSQSTPT 946


>Z81579-5|CAB04654.3| 1305|Caenorhabditis elegans Hypothetical
           protein R13H4.1 protein.
          Length = 1305

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +1

Query: 1   FNSNKTEKVRSWSDVENG 54
           FN N  +K+R W+D++ G
Sbjct: 828 FNENSLDKIRQWNDLKEG 845


>AY959881-1|AAX56914.1| 1305|Caenorhabditis elegans
           nephrocystin-4-like protein protein.
          Length = 1305

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +1

Query: 1   FNSNKTEKVRSWSDVENG 54
           FN N  +K+R W+D++ G
Sbjct: 828 FNENSLDKIRQWNDLKEG 845


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,356,979
Number of Sequences: 27780
Number of extensions: 171572
Number of successful extensions: 372
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 350
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 372
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 850313440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)