Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10a04r
         (747 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    22   6.0  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    22   6.0  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    22   6.0  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    22   6.0  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    22   6.0  
AF321227-6|AAK16426.1|  150|Tribolium castaneum Pb protein.            21   7.9  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    21   7.9  

>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = +2

Query: 512 RFLAVPASTQALSTESLNPLIWPALRKR 595
           RFL V     A++ ++   ++WP + +R
Sbjct: 223 RFLKVIIDLFAIAAQATGFVVWPIIEQR 250


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = +2

Query: 512 RFLAVPASTQALSTESLNPLIWPALRKR 595
           RFL V     A++ ++   ++WP + +R
Sbjct: 223 RFLKVIIDLFAIAAQATGFVVWPIIEQR 250


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = +2

Query: 512 RFLAVPASTQALSTESLNPLIWPALRKR 595
           RFL V     A++ ++   ++WP + +R
Sbjct: 223 RFLKVIIDLFAIAAQATGFVVWPIIEQR 250


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = +2

Query: 512 RFLAVPASTQALSTESLNPLIWPALRKR 595
           RFL V     A++ ++   ++WP + +R
Sbjct: 223 RFLKVIIDLFAIAAQATGFVVWPIIEQR 250


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +1

Query: 307 NVDPETLLSSHYKDLSVVEQLQHALPQL 390
           N+     L+  Y DLS V  + H+L +L
Sbjct: 488 NISSLRYLNLDYNDLSAVPIVTHSLTEL 515


>AF321227-6|AAK16426.1|  150|Tribolium castaneum Pb protein.
          Length = 150

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +1

Query: 376 ALPQLVGDVRHPAQHQP 426
           ALP L GD+ H A   P
Sbjct: 73  ALPHLSGDMTHGASISP 89


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +1

Query: 376 ALPQLVGDVRHPAQHQP 426
           ALP L GD+ H A   P
Sbjct: 73  ALPHLSGDMTHGASISP 89


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,003
Number of Sequences: 336
Number of extensions: 2821
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 19923648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)