Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10a04r
         (747 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr 3...    29   0.93 
SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor E|S...    28   1.6  
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz...    26   6.6  
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    26   6.6  
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p...    26   6.6  
SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyc...    25   8.7  

>SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 378

 Score = 28.7 bits (61), Expect = 0.93
 Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
 Frame = -3

Query: 700 NASGVGEILRSGI-GFDRHRL---VDRVPDRHAHPDTEP 596
           ++ G G  LR GI G  RH+L   + + P    HPDTEP
Sbjct: 98  HSMGGGLALRYGISGTHRHKLAGVIAQAPMLRCHPDTEP 136


>SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor
           E|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 511

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 17/54 (31%), Positives = 27/54 (50%)
 Frame = -1

Query: 747 LTCLLMNGCSLRSDYVMQVEWEKSSVQELDLTATDLSTECLIDMLTRIPNLRFL 586
           LT L +NGC L S     V+W   +   L++   + + E ++   T   NL+FL
Sbjct: 194 LTQLSVNGCGLNS---KDVQWITETFPSLEVLYLE-ANEIILSKATSFKNLQFL 243


>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +1

Query: 286 IHQLVNVNVDPETLLSSHYKDLSVVEQLQHAL 381
           ++QL    VD ETLLSS    L+ ++ + H++
Sbjct: 140 VNQLKKQLVDAETLLSSTQHQLTELKDVMHSM 171


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
            Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 18/61 (29%), Positives = 31/61 (50%)
 Frame = -1

Query: 408  MPHITDQLWQSVLQLLNNAKILIMGTQERLGINIHVDQLMDGIANSCPNLERLELRWDPE 229
            +P I  Q  + V QLL+N+ I +  +Q R+  N +V  +   +  S  +  +  L W+P 
Sbjct: 872  IPEIRQQERRQV-QLLSNSTIKMHPSQIRMMTNRNVANVKARLFPSMTDFYKEILSWEPA 930

Query: 228  N 226
            N
Sbjct: 931  N 931


>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 932

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -1

Query: 486 DNLSDEALHRFLSRHGSQLHGLVL 415
           D +SDE + + L+++G   HG+VL
Sbjct: 358 DMVSDEEISKALAKYGHGRHGIVL 381


>SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 898

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -1

Query: 621 DMLTRIPNLRFLSAGQINGFNDSVLKAW 538
           D  T +PN+ + S   ++  NDS  K W
Sbjct: 719 DYATSLPNVVYTSEVLLSKHNDSAFKVW 746


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,620,474
Number of Sequences: 5004
Number of extensions: 46463
Number of successful extensions: 167
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)