Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10a04r
         (747 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    23   3.0  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   4.0  
DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    22   5.3  

>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -1

Query: 108 ERADRTTVVRT-STNCRVSNYYLLSNYNDLIFN 13
           ER+    ++ + S N + SNY   +NYN+  +N
Sbjct: 307 ERSKEPKIISSLSNNYKYSNYNNYNNYNNNNYN 339


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -1

Query: 507 ALDVDSSDNLSDEALHRFLSRHGSQLH 427
           A DV ++ N+SD AL+   + HG  ++
Sbjct: 780 AFDVKTTLNISDIALYPSQTTHGYDIY 806


>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 10/32 (31%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -1

Query: 108 ERADRTTVVRT-STNCRVSNYYLLSNYNDLIF 16
           ER+    ++ + S N + SNY   +NYN  ++
Sbjct: 74  ERSKEPKIISSLSNNYKYSNYNNYNNYNKKLY 105


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,568
Number of Sequences: 438
Number of extensions: 3202
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23388480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)