Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10a04r
(747 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g58530.1 68416.m06524 F-box family protein-related contains w... 39 0.003
At5g53320.1 68418.m06627 leucine-rich repeat transmembrane prote... 32 0.46
At1g54430.1 68414.m06209 hypothetical protein 31 1.1
At1g12550.1 68414.m01455 oxidoreductase family protein similar t... 29 2.5
At3g12400.1 68416.m01545 tumour susceptibility gene 101 (TSG101)... 29 3.3
At1g74190.1 68414.m08592 leucine-rich repeat family protein cont... 29 3.3
At2g25490.1 68415.m03052 F-box family protein (FBL6) contains si... 29 4.3
At5g06140.1 68418.m00683 phox (PX) domain-containing protein sim... 28 5.7
At2g47280.1 68415.m05903 pectinesterase family protein contains ... 28 5.7
At5g65050.1 68418.m08182 MADS-box protein (MAF2) 27 10.0
At5g18560.1 68418.m02194 AP2 domain-containing transcription fac... 27 10.0
>At3g58530.1 68416.m06524 F-box family protein-related contains weak
similarity to F-box protein FBL2 (GI:6010699) [Rattus
norvegicus]
Length = 353
Score = 39.1 bits (87), Expect = 0.003
Identities = 26/97 (26%), Positives = 54/97 (55%), Gaps = 2/97 (2%)
Frame = -1
Query: 747 LTCLLMNGCSLRSDYVMQVEWEK-SSVQELDLT-ATDLSTECLIDMLTRIPNLRFLSAGQ 574
+T L ++GC +D MQ+ E ++ L++T ++ + L+ +L + +L+ L+
Sbjct: 165 ITDLNLSGCKSLTDKSMQLVAESYPDLESLNITRCVKITDDGLLQVLQKCFSLQTLNLYA 224
Query: 573 INGFNDSVLKAWVEAGTARNLVALDVDSSDNLSDEAL 463
++GF D KA+++ +L LD+ + N+SDE +
Sbjct: 225 LSGFTD---KAYMKISLLADLRFLDICGAQNISDEGI 258
>At5g53320.1 68418.m06627 leucine-rich repeat transmembrane protein
kinase, putative
Length = 601
Score = 31.9 bits (69), Expect = 0.46
Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Frame = -1
Query: 684 EKSSVQELDLTATDLSTECLIDMLTRIPNLRF--LSAGQINGFNDSVLKA 541
+ SSV L L AT L + + ++ R+ NLRF LS+ I+G + L+A
Sbjct: 63 DHSSVDALHLAATGLRGDIELSIIARLSNLRFLILSSNNISGTFPTTLQA 112
>At1g54430.1 68414.m06209 hypothetical protein
Length = 1639
Score = 30.7 bits (66), Expect = 1.1
Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
Frame = -1
Query: 615 LTRIPNLRFLSAGQINGFNDSVLKAWVEAGT--ARNLVALDVDSSDNLSDEALHRFLSRH 442
L P RF I + + + +++G AR A + + +S LH+F+S+
Sbjct: 225 LNSTPATRFFFYSSIQPIQEFIKRMGIKSGESIARADTAAGIRKKEMVSIHQLHKFISKT 284
Query: 441 GSQLHGLVLGG-MPHITD 391
Q++ +GG M H+ D
Sbjct: 285 DEQMYCKRMGGLMCHVLD 302
>At1g12550.1 68414.m01455 oxidoreductase family protein similar to
glyoxylate reductase from Homo sapiens (gi:6002730);
contains Pfam D-isomer specific 2-hydroxyacid
dehydrogenase, NAD binding domain PF02826
Length = 323
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -1
Query: 489 SDNLSDEALHRFLSRHGSQLHGLVLGGMPHITDQL 385
+D S E+L F RH S V+ G +TD+L
Sbjct: 34 TDTSSSESLPSFFPRHASSARAFVISGRLPVTDEL 68
>At3g12400.1 68416.m01545 tumour susceptibility gene 101 (TSG101)
family protein contains Pfam profile PF05743: Tumour
susceptibility gene 101 protein (TSG101); similar to
Tumor susceptibility gene 101 protein
(Swiss-Prot:Q99816) [Homo sapiens]
Length = 398
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = -1
Query: 576 QINGFNDSVLKAWVEA--GTARNLVALDVDSSDNLSD 472
QI N +L +WV G +NLV LDVD++ D
Sbjct: 286 QIISMNTDILDSWVRENQGKTKNLVDLDVDNAFECGD 322
>At1g74190.1 68414.m08592 leucine-rich repeat family protein
contains leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; contains similarity to Cf-2.1
[Lycopersicon pimpinellifolium] gi|1184075|gb|AAC15779
Length = 965
Score = 29.1 bits (62), Expect = 3.3
Identities = 26/78 (33%), Positives = 38/78 (48%)
Frame = -1
Query: 747 LTCLLMNGCSLRSDYVMQVEWEKSSVQELDLTATDLSTECLIDMLTRIPNLRFLSAGQIN 568
LT LL++ L+ D M + + KSS+Q LDL+A LS +R + L +++
Sbjct: 561 LTALLISDNFLKGDIPMSL-FNKSSLQLLDLSANSLSGVIPPQHDSRNGVVLLLQDNKLS 619
Query: 567 GFNDSVLKAWVEAGTARN 514
G L A VE RN
Sbjct: 620 GTIPDTLLANVEILDLRN 637
>At2g25490.1 68415.m03052 F-box family protein (FBL6) contains
similarity to grr1 GI:2407790 from [Glycine max]
Length = 628
Score = 28.7 bits (61), Expect = 4.3
Identities = 17/58 (29%), Positives = 30/58 (51%)
Frame = -1
Query: 516 NLVALDVDSSDNLSDEALHRFLSRHGSQLHGLVLGGMPHITDQLWQSVLQLLNNAKIL 343
+LV ++ NL+D + +R+G L L + G +ITD S++ + N +IL
Sbjct: 492 SLVKINFSGCSNLTDRVISAITARNGWTLEVLNIDGCSNITD---ASLVSIAANCQIL 546
>At5g06140.1 68418.m00683 phox (PX) domain-containing protein
similar to SP|O60749 Sorting nexin 2 {Homo sapiens};
contains Pfam profile PF00787: PX domain
Length = 402
Score = 28.3 bits (60), Expect = 5.7
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +1
Query: 517 PSSPSFHPSFKYRVIEPVDLAGAQKAQVRY 606
P SPS HP V +PV L +A + Y
Sbjct: 17 PRSPSSHPYLSVSVTDPVKLGNGVQAYISY 46
>At2g47280.1 68415.m05903 pectinesterase family protein contains
Pfam profile: PF01095 pectinesterase
Length = 320
Score = 28.3 bits (60), Expect = 5.7
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Frame = -1
Query: 711 SDYVMQVEWE--KSSVQELDLTATDLS-TECLIDMLTRIPNLRFLSAGQINGF 562
SD V+ + W+ ++ E DLT + T D R+P L+ LS +++GF
Sbjct: 247 SDVVLPIGWDAWRAKGNERDLTFVEAGCTGAGADTSQRVPWLKKLSLSEVDGF 299
>At5g65050.1 68418.m08182 MADS-box protein (MAF2)
Length = 182
Score = 27.5 bits (58), Expect = 10.0
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = -3
Query: 721 QSSIRLRNASGVGEILRSGIGFDRHRLVDRVPDRHAHPDTEPALSERRPN 572
+SSI + SG G++ +S G + +++DR HA L+E+ N
Sbjct: 40 ESSIAVLVVSGSGKLYKSASGDNMSKIIDRYEIHHADELEALDLAEKTRN 89
>At5g18560.1 68418.m02194 AP2 domain-containing transcription
factor, putative AP2/EREBP-like transcription factor
LEAFY PETIOLE, Arabidopsis thaliana, EMBL:AF216581
Length = 348
Score = 27.5 bits (58), Expect = 10.0
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Frame = +1
Query: 337 HYKDLSVVEQLQHALPQLV---GDVRHPAQHQPVQLRA 441
HY++ +Q +H LPQ V + P +HQ V ++A
Sbjct: 155 HYQNYHQPQQPKHTLPQTVLPAASFKTPVRHQSVDIQA 192
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,057,943
Number of Sequences: 28952
Number of extensions: 265843
Number of successful extensions: 1065
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1016
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1064
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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