Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10a04f
(664 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos... 38 0.001
SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb... 36 0.005
SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|... 34 0.016
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb... 34 0.016
SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion transporter|... 30 0.34
SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|c... 28 1.4
SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|... 27 2.4
SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|c... 26 4.2
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb... 26 5.6
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 25 7.4
SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomy... 25 9.7
>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
Pof11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 506
Score = 38.3 bits (85), Expect = 0.001
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = +1
Query: 250 EKLPDKVLLNIFSYLTHREICRMATVCRRWRMVAYDTKLW 369
E P++V L +FSYL ++C+ + +RW+ + D +W
Sbjct: 74 EVFPEEVSLRVFSYLDQLDLCKCKLMSKRWKRLLEDPGIW 113
>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 605
Score = 35.9 bits (79), Expect = 0.005
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Frame = +1
Query: 163 GILN-VDTATIAITRDELSSSFRRRQMTTIEKLPDKVLLNIFSYLTHREICRMATVCRRW 339
GILN ++ ++ L S R + + LP ++ I S+L R +C+ A V + W
Sbjct: 84 GILNNCSSSLLSFASSTLDSLVR---LDFLSLLPVEISFRILSFLDARSLCQAAQVSKHW 140
Query: 340 RMVAYDTKLW 369
+ +A D +W
Sbjct: 141 KELADDDVIW 150
>SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 463
Score = 34.3 bits (75), Expect = 0.016
Identities = 18/47 (38%), Positives = 25/47 (53%)
Frame = +1
Query: 253 KLPDKVLLNIFSYLTHREICRMATVCRRWRMVAYDTKLWTHVSLRPE 393
++P++V NI SYL E+ +TVC WR T LW V + E
Sbjct: 2 RVPNEVCFNILSYLEADELRCKSTVCTSWRNFIIPT-LWEKVVFQNE 47
>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 662
Score = 34.3 bits (75), Expect = 0.016
Identities = 17/58 (29%), Positives = 29/58 (50%)
Frame = +1
Query: 196 ITRDELSSSFRRRQMTTIEKLPDKVLLNIFSYLTHREICRMATVCRRWRMVAYDTKLW 369
+ RD S++ R T+ LP ++L+ IFS+L R + C+ W+ + D W
Sbjct: 18 MNRDHSSNNTNR----TVLNLPKEILIIIFSFLDPRSLLSAQCTCKYWKKLLSDDLSW 71
>SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 29.9 bits (64), Expect = 0.34
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -2
Query: 231 PSKTRR*LISGYRYSRGVHIQNAPRIHDRIQS 136
PS T R + +G+ Y + +QN PR DR S
Sbjct: 2 PSNTSRSVPTGFYYKQNARMQNRPRFSDRKHS 33
>SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 577
Score = 27.9 bits (59), Expect = 1.4
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +1
Query: 256 LPDKVLLNIFSYLTHREICRMATVCRRWR 342
LP +VLL I L + I + VC+ WR
Sbjct: 139 LPREVLLCILQQLNFKSIVQCMQVCKHWR 167
>SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|chr
2|||Manual
Length = 467
Score = 27.1 bits (57), Expect = 2.4
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = +1
Query: 268 VLLNIFSYLTHREICRMATVCRRWRMVAYDTKLW 369
+LL I +YL +++I ++ C+ V D +W
Sbjct: 13 ILLEISTYLDYKDIVHLSETCKSLSYVFDDKTIW 46
>SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|chr
3|||Manual
Length = 594
Score = 26.2 bits (55), Expect = 4.2
Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Frame = -2
Query: 390 RPQTNVRP--QFRVVRNHPPSSANSCHT 313
+P TN+ QFRV+R PP+S + H+
Sbjct: 149 QPPTNLETALQFRVIRTIPPNSLDLMHS 176
>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1334
Score = 25.8 bits (54), Expect = 5.6
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 378 NVRPQFRVVRNHPPSSANSCHTTYLT 301
N P F V NH P+++NS T+ T
Sbjct: 129 NTTPHFPQVSNHAPNNSNSPSLTWHT 154
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 25.4 bits (53), Expect = 7.4
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +1
Query: 190 IAITRDELSSSFRRRQMTTIE 252
IA ELSSS RRRQ T+++
Sbjct: 589 IANAMAELSSSMRRRQSTSVD 609
>SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 523
Score = 25.0 bits (52), Expect = 9.7
Identities = 11/41 (26%), Positives = 20/41 (48%)
Frame = -3
Query: 182 VSTFRMPHESMIESNQAKSHYHTNDTQYTRTAPSKTAVHCR 60
+S +++P ES+ + + S + YT P A+ CR
Sbjct: 286 ISNYKVPIESLNQPSDQYSFHDAYLQSYTHRYPVHRAIMCR 326
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,925,165
Number of Sequences: 5004
Number of extensions: 61995
Number of successful extensions: 153
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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